Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2105 136 3e-27 seq1809 136 3e-27 seq4126 134 1e-26 seq3162 132 4e-26 seq1115 127 2e-24 >seq2105 Length=11779 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || || ||||||||| | ||||| |||||| Sbjct 11316 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 11375 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| | |||||||| || ||||| ||||||||||||||| Sbjct 11376 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 11435 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||||| | ||||||||||| || | ||| || Sbjct 11436 GATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTT 11495 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || || ||||| Sbjct 11496 GCCGGTCAGGGTCTTGACGAAGATTTGCAT 11525 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || || ||||||||| | ||||| |||||| Sbjct 11544 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 11603 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| |||| | |||||||| || ||||| |||||||||||||| Sbjct 11604 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 11663 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| || |||| ||||||||||| || | ||| || Sbjct 11664 AATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACCTCGAGCGTGATCGTCTT 11723 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || || ||||| Sbjct 11724 GCCGGTCAGGGTCTTGACGAAGATTTGCAT 11753 >seq1809 Length=102289 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||| ||| || ||||| ||||||| Sbjct 55394 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 55335 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||||||||| ||||| || || || ||||| ||||||||| Sbjct 55334 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 55275 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||||||||||| ||| | ||| ||| Sbjct 55274 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 55215 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || ||||| || ||| || Sbjct 55214 CCCGTAAGAGTCTTGACAAAGATTTGCCTG 55185 >seq4126 Length=66405 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || || ||||||||| | ||||| ||||||| Sbjct 66265 ACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCG 66206 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| | |||||||| || ||||| ||||||||||||||| Sbjct 66205 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 66146 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| | ||||||||||| || | ||| ||| Sbjct 66145 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 66086 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 66085 CCGGTCAGGGTCTTGACGAAGATTTGCAT 66057 >seq3162 Length=70493 Score = 132 bits (146), Expect = 4e-26 Identities = 161/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||||| || ||||| || || |||||||||||| Sbjct 216 TACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGG 157 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||||||||| || |||||| |||||||||| || || || || | Sbjct 156 CGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGG 97 Query 118630 GTATGCCCTCCTTGTC-TGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 | ||||||||||| || || | | || || || || | |||| ||||||| | ||| Sbjct 96 GAATGCCCTCCTTATCCTGGA--TCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTC 39 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 118723 |||||||| || | ||| ||||| ||||| || || Sbjct 38 GACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTT 3 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||||| || ||||| || || ||||||||||| | || || ||| Sbjct 428 CAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATC 369 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| | |||||||| || || || ||||| |||||||| Sbjct 368 CTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 309 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| ||||||| ||||||||||| || | ||| Sbjct 308 CTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGT 249 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 248 CTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 216 >seq1115 Length=48595 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||| ||| || ||||| ||||||| Sbjct 44735 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 44676 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||||||||| ||||| || || || ||||| ||||||||| Sbjct 44675 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 44616 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||||||||||| ||| | || ||| Sbjct 44615 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 44556 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || || || || || ||||| || |||| Sbjct 44555 CCCGTGAGGGTCTTGACAAAGATTTGCA 44528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433805422757008