Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2105 118 9e-22 seq4126 113 4e-20 seq1115 113 4e-20 seq1809 109 5e-19 >seq2105 Length=11779 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 11525 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 11466 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 11465 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 11406 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| | | |||||||||| Sbjct 11405 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 11346 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || || || || ||||| || || ||||| | || |||| ||| Sbjct 11345 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGA 11298 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || |||||||| Sbjct 11753 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 11694 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || | || || | ||| ||||| || || ||||| || ||| Sbjct 11693 GATACGATCGA--CAATGTCAAGGCTAAGATTCAG-GACAAGGAGGGCATTCCTCCAGAC 11637 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || ||||| || | || |||| ||||| | | ||||||| Sbjct 11636 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTAC 11577 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || ||||| || || ||||| Sbjct 11576 AATATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 11542 >seq4126 Length=66405 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 66057 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 66116 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 66117 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 66176 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| | | |||||||||| Sbjct 66177 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 66236 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || || || Sbjct 66237 ATCCAGAAGGAGTCGACGCTGCACTTGGTTCT 66268 >seq1115 Length=48595 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||| ||||||| ||||| ||||| | || || || ||||||| |||| || |||||| Sbjct 44524 ACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCG 44583 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||||| | ||| || ||| ||||| ||||| || || || ||| Sbjct 44584 TCCGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGAC 44643 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || | || |||| ||||| ||| ||| ||| Sbjct 44644 CAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTAC 44703 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || || Sbjct 44704 AACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 44738 >seq1809 Length=102289 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| ||||| |||||| | || || || | ||||| |||| || |||||||| || Sbjct 55188 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55247 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 ||| ||||| | ||| || ||| ||||| ||||| || || || ||||| || Sbjct 55248 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 55307 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || ||||||||||| || | || |||| ||||| ||| ||| ||||| || Sbjct 55308 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 55367 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || Sbjct 55368 CCAAAAGGAGTCGACCCTCCACTTGGTCCT 55397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433303051682060