Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2792 95.1 2e-14 seq2304 91.5 3e-13 >seq2792 Length=817 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||| ||||| || ||||||||||| ||| |||| |||||||||| Sbjct 447 GCCTGGTTAGCTCAGTCGGCAGAGCACTTGACTCTTAATCAAGTTGTCGCGGGTTCGAGC 506 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 507 CCCGCATCGGGC 518 >seq2304 Length=46192 Score = 91.5 bits (100), Expect = 3e-13 Identities = 670/1074 (62%), Gaps = 23/1074 (2%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 33573 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 33632 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| | ||||| | || || ||| ||||||||||||| Sbjct 33633 GTCGTCGGTCGAGACAACTATGGTGTTTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 33692 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 33693 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 33751 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTCA 218074 |||||| ||| || || ||||| || | || | || || ||||| ||| ||| Sbjct 33752 GGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAGCTCA 33810 Query 218075 TGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTTCT 218134 || | ||| | ||| ||| || || || |||||| | || | || |||||| Sbjct 33811 TGATCATGGCCGATCAAGATCACGATGGATCGCACATTAAGGGTCTGATCATCAACTTCC 33870 Query 218135 TCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCTGAAGAAGTTTTCCACTC 218194 || | | |||||| | ||| | || ||| || ||||| ||| | Sbjct 33871 TCGATTACTGGTTCCCTTCGTTGCTCAAGCTAAAGGGCTTCTTGCTCGAGTTTATCACCC 33930 Query 218195 CCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAG------TTTTACAGTCTTCCTG 218248 ||||||| |||| || |||| | ||| ||| |||| || ||||| Sbjct 33931 CCATCGT-----CAAGGCG-ACCAAGGGGAACAAGGAGTTGTCATTTTTCACAATTCCTC 33984 Query 218249 ACTATGAGAGTTGGAAGCAGAACACTGCCGACTGTGCCAAATGGTCTATCAAGTATTTCA 218308 | || ||| |||||| | | || | ||| || |||| |||||||| |||| Sbjct 33985 AGTACGAGCACTGGAAGGAAGAGACCGATGACGGTCGTGGATGGCGCATCAAGTACTTCA 34044 Query 218309 AGGGTCTCGGAACAAGCACATCCGAAGATGCCAAGAAGTACTT---CAAGAACCTCAAG- 218364 |||| | || || || || || || |||||||| ||| | |||| Sbjct 34045 AGGGATTGGGTACGAGTGACGCCAGGGACGCGGTCAAGTACTTTGGCAACATGGACAAGC 34104 Query 218365 -TCGCTCGTGAAGATCTTTGGGTGGACCGAAGACTCTGGCGAGCTCATCGACCGATCTTT 218423 ||||| || | || | ||| | || ||||||| |||||| | || Sbjct 34105 ATCGCT--TGCCGTTCCGCCCTTCGACGCAGGAAGAGCGCGAGCTGATCGACATGGCCTT 34162 Query 218424 CAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGGAAACCA 218483 ||||||| | || | |||||| ||||| | | |||| ||||| | | Sbjct 34163 CAACAAGAAGAAGGCCGACAACCGCAAGGAATGGCTCCGAGGCTTCGTCCCCGGCACGTA 34222 Query 218484 GTTGGACCAGTCGAAGACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCT 218543 | ||||| | || | |||| || || |||||| |||||||| | || || Sbjct 34223 CCTCGACCACAGCATCGCCGAAGTCCCGATCGAGGATTTCATCAACAAGGAGTTGATCCT 34282 Query 218544 TTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATC 218603 |||||| | || | ||| ||||||||| || | ||||| | ||||| Sbjct 34283 CTTCTCGATGGCCGACAACGTGCGCTCTATTCCCTCTGTCATTGATGGGTTTAAGCCGGG 34342 Query 218604 GCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGC 218663 || || ||| || | || | |||||||| || || || || || ||||||| Sbjct 34343 TCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGCAAGTTGACGCAGGAGATCAAGGTCGG 34402 Query 218664 TCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCA 218723 || || ||||| || |||| || | |||||||||||||| |||| |||| Sbjct 34403 ACAATTGGGCGGTTACGTCGCCGAGCACTCGGCGTACCATCACGGTGAAATGAGTTTGCA 34462 Query 218724 GGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCT 218783 || |||| | ||| |||| || | | || || |||||| | ||| | || Sbjct 34463 AGGCACCATCATCGGCCTGGCGCAACAGTTCGTCGGGTCCAACAACCTCAACATTCTCGA 34522 Query 218784 CCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTA 218843 ||| |||||||| |||||| | ||||| ||||| || || ||||| || | || Sbjct 34523 CCCGAACGGTCAATTTGGTACGCGTCTGCAAGGTGGTAAAGACGCGGCTTCGGCTCGTTA 34582 Query 218844 TATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGA 218897 ||||| || || | || || | ||||| || ||| ||| || ||||| Sbjct 34583 CATCTTCACGAACGTATCATCCATCACGCGTAGCGTCTTCCATCCCGCTGATGA 34636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027774588892884