Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2105 132 1e-25 seq4126 123 6e-23 seq3162 118 3e-21 seq1809 109 1e-18 >seq2105 Length=11779 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || |||||||| || |||||| Sbjct 11527 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 11586 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||| || || || | || || || |||||||||| ||||| || ||| Sbjct 11587 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTG---GTCTGGA 11643 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || || || || || || || | ||| ||| || Sbjct 11644 GGAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCG 11703 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 11704 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11753 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | || | ||| || || |||||||| || ||| Sbjct 11296 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCG 11355 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || || ||||||| ||||| || ||| Sbjct 11356 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTG---GTCT 11412 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || || || ||||| || || || ||||| || || | || || Sbjct 11413 GGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGAC 11472 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 11473 TCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11525 >seq4126 Length=66405 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || |||||||| || |||||| Sbjct 66283 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 66224 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || ||||||| ||||| || ||||| Sbjct 66223 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGG---TCTGGA 66167 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || || ||||| || || | || || || Sbjct 66166 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 66107 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 66106 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 66057 >seq3162 Length=70493 Score = 118 bits (130), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||||| Sbjct 214 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 155 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| ||||| ||||| |||||| Sbjct 154 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGG---TCTGGG 98 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || | || ||||| || || | || || || Sbjct 97 GGAATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCG 38 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 || ||||||||||||||||| || ||||| ||||||| Sbjct 37 ACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTGA 1 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | || | ||| || || ||||| || || || Sbjct 445 TGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCC 386 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 |||||||| || || || || | || || || |||||||||| ||||| || ||| Sbjct 385 GCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGG---TCT 329 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || ||||| || || | || ||||| || || | || ||| Sbjct 328 GGGGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGAC 269 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || || || |||||||| || |||||||| Sbjct 268 TCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 216 >seq1809 Length=102289 Score = 109 bits (120), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || |||||||| | ||||| || || || | || || || || ||| Sbjct 55376 TCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 55317 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| ||| ||||| || || ||||| || | || ||| Sbjct 55316 ATGAGACGTTGCTGG---TCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACG 55260 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || ||||| ||||||||||| || || ||||||||| Sbjct 55259 TTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTG 55200 Query 288460 ACGAATATCTGC 288471 || || || ||| Sbjct 55199 ACAAAGATTTGC 55188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179582999942872