Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4442 174 2e-38 seq1835 134 2e-26 seq2304 131 2e-25 seq1558 104 3e-17 >seq4442 Length=13052 Score = 174 bits (192), Expect = 2e-38 Identities = 530/808 (66%), Gaps = 21/808 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| ||||||| ||||| |||| ||||| || | || ||||| || Sbjct 4359 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 4418 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || || | |||||| | || || |||| Sbjct 4419 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTT-ACCCACGCCTCGCCGACGCTCT 4477 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 4478 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATG 4537 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | |||||||||| ||| || | || || | ||||| ||| || | Sbjct 4538 ATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCG 4597 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 |||||||||| || |||||| | || | || | | | ||| || | | || || Sbjct 4598 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACC--GGCTCCTACATCGCCGGCAC 4655 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 4656 GAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTA 4715 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 4716 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 4772 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | || ||||| || | || ||||| || | ||||| | || Sbjct 4773 GCACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCG 4832 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||||| || ||||||||||| ||||| |||||| || | || ||| Sbjct 4833 CGCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAG 4890 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| ||||| ||||||| || || | | | || ||||| || ||| | | Sbjct 4891 GCCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTACACGAAGTCTAT 4950 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || |||||||| ||| | | | || ||||| | || | || || | ||| Sbjct 4951 GGCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACG 5010 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || ||||| | | || ||| ||||| | || Sbjct 5011 ATCCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCC 5069 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||| |||||||||||| ||| | || || ||||||||| | || ||| Sbjct 5070 TTTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGAT 5129 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATC 112406 |||| || ||||| || || || ||| Sbjct 5130 CAAGTCGTCGAACCTGTGCACCGAGATC 5157 >seq1835 Length=38425 Score = 134 bits (148), Expect = 2e-26 Identities = 281/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 26030 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 25971 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 25970 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 25911 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||| | ||||| ||| || ||| ||| ||| | ||||| Sbjct 25910 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 25851 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 13830 ||| || || ||| | || ||| ||| |||||| || | ||||||| || | | || Sbjct 25850 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 25792 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 25791 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 25732 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 13950 ||||||| ||||| ||||| || || | ||||||| ||| | || || | Sbjct 25731 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 25672 Query 13951 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 14006 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 25671 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 25616 >seq2304 Length=46192 Score = 131 bits (144), Expect = 2e-25 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 33865 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 33806 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 33805 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 33746 Query 176843 TTCTTGAGATCG-TTGAACTCTTGG-TTTGATG-TGAGCTGTGTGACAGAGGCATCACGA 176899 | ||| ||||| ||||| ||| || ||| | ||| | || | | || ||||| Sbjct 33745 TGCTT--GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 33689 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||| ||||| |||| || ||||| || |||| Sbjct 33688 ACGTTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCC 33629 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 33628 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 33569 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 || | | | |||||| || ||||||||||| || Sbjct 33568 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 33534 >seq1558 Length=41933 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || |||||| ||| | || || Sbjct 36457 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 36398 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 36397 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 36338 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 36337 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 36278 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 36277 CCACGAGTCCCC 36266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620705745161280