Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4442 134 2e-26 >seq4442 Length=13052 Score = 134 bits (148), Expect = 2e-26 Identities = 430/658 (65%), Gaps = 8/658 (1%) Strand=Plus/Minus Query 110375 CCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| ||||| || |||||||| ||| || || || |||||||| | ||| | Sbjct 5123 CCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTG 5064 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGC 110492 |||||||| ||| | | ||||| || | ||| | | | ||| |||||| ||| Sbjct 5063 CCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCG-CGGGGATCGTTTT 5005 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 || ||| | || |||| ||||| || | ||||| | || |||| || || || Sbjct 5004 CTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGAC 4945 Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612 || || || || | | |||| |||||||| | ||||| || | |||| || Sbjct 4944 TTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGAC 4885 Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672 | || |||||| || || |||||||| | ||| |||| || ||||| ||| | || Sbjct 4884 ACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTC 4825 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| ||| || |||| || || | || || | |||||| || || Sbjct 4824 CTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTC 4765 Query 110733 GAGATAGACAGCGATGGATCCCTTACGACGAC--CCGCCT-GGTTAACATAGCGTGCTGT 110789 ||| |||| |||| || ||| ||| || ||| ||| || ||||| || || Sbjct 4764 GAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGT 4705 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | ||| |||| | |||||| || | ||| || | || | || || || || || Sbjct 4704 GTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTCGTGCCGGCGAT 4645 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 ||| | || || |||| |||||| || ||| |||||||| || ||| Sbjct 4644 GTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGA 4585 Query 110910 AATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG 110968 || | || ||| ||| | || || | ||||| || ||||||||||| |||| | | Sbjct 4584 GATGAGCGCGCACGTCT-TAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCG 4526 Query 110969 CAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 | || || || || || | ||| || |||||||||| || |||||||| || || Sbjct 4525 TGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 4468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588941220967200