Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1809 116 9e-21 seq1115 116 9e-21 seq3162 96.9 8e-15 seq2105 89.7 1e-12 seq4126 84.2 5e-11 >seq1809 Length=102289 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| |||||||||||||| ||||| || || | Sbjct 55404 GAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCG 55345 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || | |||||||| | || ||| ||||| Sbjct 55344 GCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTC 55285 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | |||| || ||| || || || || Sbjct 55284 CTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGT 55225 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGA 152097 || || |||||||| |||||||| || |||| Sbjct 55224 GATCGTCTTGCCCGTAAGAGTCTTGACAAAGA 55193 >seq1115 Length=48595 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||||| |||||||||||||| ||||| || || | ||||| Sbjct 44739 GAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATC 44680 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| ||||| || | |||||||| | || ||| |||||||| || Sbjct 44679 CTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTC 44620 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||| | || | |||| || ||| || || || || || || Sbjct 44619 TTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGT 44560 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 ||||||||||| ||||| || |||| |||| Sbjct 44559 CTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 44528 >seq3162 Length=70493 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || |||||||||||||| || | || | ||||| || | Sbjct 422 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCCTCGA 364 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | ||||||||| | | || |||||||| || |||| Sbjct 363 GCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAA 304 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| || || || || || || |||| Sbjct 303 TCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCTTGC 244 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || |||| |||||| Sbjct 243 CCGTAAGCGTCTTGACAAAGATCTGCAT 216 >seq2105 Length=11779 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||| ||||||||||| | || | Sbjct 11535 GAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCG 11594 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| | | ||||||||| | | || || || Sbjct 11595 GCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTC 11654 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | || || ||| || || || || Sbjct 11655 CTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACCTCGAGCGT 11714 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| ||||| Sbjct 11715 GATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11753 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||| ||||||||||| | || | Sbjct 11307 GAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCG 11366 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| | | ||||||||| | | || || || Sbjct 11367 GCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTC 11426 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | |||| || ||| || || || || Sbjct 11427 CTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGT 11486 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| ||||| Sbjct 11487 GATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11525 >seq4126 Length=66405 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||| ||||||||||| | || | Sbjct 66275 GAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCG 66216 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| | | ||||||||| | | || || || Sbjct 66215 GCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTC 66156 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | |||| || ||| || || || || Sbjct 66155 CTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGT 66096 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| ||||| Sbjct 66095 GATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 66057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153750963553804