Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011025.1_202016-07-08] 4,724 sequences; 26,244,534 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3162 138 1e-27 seq2105 138 1e-27 seq4126 125 7e-24 seq1809 102 8e-17 seq1115 96.9 3e-15 >seq3162 Length=70493 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| ||||| || || | | Sbjct 442 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 383 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| ||||| |||| ||||| ||||| | |||| Sbjct 382 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 323 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || | | ||| | | | ||||| |||||| || Sbjct 322 ATGCCTTCCTTGTCC-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 264 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || ||||| |||||||| || || |||||||| Sbjct 263 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 216 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| ||||| || |||| | Sbjct 214 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 155 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| || || || |||||||| | |||| Sbjct 154 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 95 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| || ||| ||| | | | ||||| ||||| || Sbjct 94 ATGCCCTCCTTATCCTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCCGAGGACTCGAC 36 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 ||| | ||| ||||| || |||||||||||||| Sbjct 35 CTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTT 3 >seq2105 Length=11779 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||||||| ||||||||| || || || |||| | Sbjct 11527 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 11586 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| |||| ||||| ||||| | ||| Sbjct 11587 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGA 11646 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | || | | | || || |||||| || Sbjct 11647 ATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGAC 11705 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 11706 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11753 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| |||||||| ||||||||| || || || |||| | Sbjct 11299 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 11358 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||| ||||| | ||| Sbjct 11359 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 11418 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | | ||||| ||||| || Sbjct 11419 ATGCCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 11477 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 11478 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11525 >seq4126 Length=66405 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||||| ||||||||| || || || |||| | Sbjct 66283 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 66224 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||| ||||| | ||| Sbjct 66223 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 66164 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | | ||||| ||||| || Sbjct 66163 ATGCCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 66105 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 66104 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 66057 >seq1809 Length=102289 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| || || || |||||| || ||||| ||||||| Sbjct 55413 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 55354 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || ||||||||||||||||| || || || || || ||||| | || Sbjct 55353 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 55294 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| ||| || ||| ||| | | | |||||| |||||| | Sbjct 55293 GATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGA 55235 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || ||||| || ||||| || || || ||| || Sbjct 55234 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTG 55185 >seq1115 Length=48595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| || ||||| ||||||| | |||||| | || ||||||||||||||||| || Sbjct 44718 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 44659 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || || || ||||| | || | || |||||||| ||| || ||| ||| Sbjct 44658 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGT 44600 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| |||||| ||||| | || || || || ||||| || ||||| | Sbjct 44599 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 44540 Query 41850 CGAAAATCTGCA 41861 | || || |||| Sbjct 44539 CAAAGATTTGCA 44528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462276700948800