Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2236 194 2e-44 seq2415 134 1e-26 seq1989 127 2e-24 seq2405 125 7e-24 seq4277 123 3e-23 seq3415 123 3e-23 seq1941 123 3e-23 >seq2236 Length=166925 Score = 194 bits (214), Expect = 2e-44 Identities = 177/223 (79%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||| ||||| || || ||||||| ||| ||| |||||||||||||||||| Sbjct 93322 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 93263 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 93262 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 93203 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||||||||||||||| |||||||||| ||| || || Sbjct 93202 CTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 93143 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 93142 GGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 93100 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| || ||||||||||| || ||| | |||||||| |||| ||| |||| Sbjct 92603 TTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTCTCCAAC 92544 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||| | |||||||| || || ||||||||| || Sbjct 92543 GAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTG 92500 >seq2415 Length=48512 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || ||||||||||| ||||||||| |||| ||||| | ||| Sbjct 44445 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 44504 Query 40751 ACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| || |||||||| | |||||| Sbjct 44505 ACACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 44563 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| ||||| || || | |||||| | |||||||||| Sbjct 44564 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 44623 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 44624 ATCCAAAAGGAGTCGACCCTCCA 44646 >seq1989 Length=66411 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 66063 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 66122 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 66123 GACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 66181 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 66182 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 66241 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 66242 TATCCAGAAGGAGTCGACGCTGCA 66265 >seq2405 Length=70258 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| |||| ||||| | | Sbjct 70043 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69984 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || ||||| ||| | ||||| Sbjct 69983 GACACGATCGACAACG-TCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 69925 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||||||||| ||||| || || | || || ||| || ||||| Sbjct 69924 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 69865 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| || | ||| |||| Sbjct 69864 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 69829 Score = 125 bits (138), Expect = 7e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40705 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AAC 40763 || ||||| |||||||| || ||||| |||| ||||| || | |||| | | ||| Sbjct 70256 AAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAAC 70197 Query 40764 GCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTA 40823 | ||||| || || | || || |||||||| ||| | ||||| ||||| ||||||| Sbjct 70196 G-TCAAGACCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAACAACGTCTCATCTT 70138 Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 ||| ||||| ||||| || || | ||||| ||| ||| |||||||||||||||||| | Sbjct 70137 CGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATCCAGAAGGAGTC 70078 Query 40884 CACGCTGCATCTAGTGTTGCG 40904 ||||| || | ||| |||| Sbjct 70077 GACGCTCCACTTGGTGCTGCG 70057 >seq4277 Length=215895 Score = 123 bits (136), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||||| | ||| | ||||| || ||| ||| ||| ||| | ||||| Sbjct 187099 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 187158 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||| | ||||||| | | | | ||| || |||| ||| | || ||| Sbjct 187159 GGCAGCGACCTCAACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 187218 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| |||||||| || || |||| || ||||| |||| ||| | Sbjct 187219 CACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAACTTGGTTGAGAGG 187278 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| | ||||||||| | ||||||||| ||||||| || |||||||||||| Sbjct 187279 TTCTCAAGTGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGCTTTCAGATC 187332 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||| Sbjct 187793 TTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCTGGCCTCTCTTTCTCCAAC 187852 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 187853 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 187912 Query 117206 TTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCAT 117264 ||| || |||| | | || | || | |||||| | || ||||||| || Sbjct 187913 TTGAACAAGAGACCAGGTCAAGGATTGGTGCATCG-GATCGTGAAGGAGGCGGTCGATAT 187971 Query 117265 CGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 |||| || ||| | ||||| || ||||| ||| Sbjct 187972 CGAGAAGGAGTTCTTGACCGAGGCTCTGCCTGTG 188005 >seq3415 Length=158045 Score = 123 bits (136), Expect = 3e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 |||||| || || || || || |||||||| || |||||| |||| ||||| | |||| Sbjct 55151 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55210 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | |||| ||||| || || | ||||| || |||||||| | ||||||| Sbjct 55211 CACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 55269 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 |||| ||||||| || ||||| ||||| || || | |||||| | ||||||||||| Sbjct 55270 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 55329 Query 40871 TCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||| | || || || Sbjct 55330 TCCAAAAGGAGTCGACCCTCCA 55351 >seq1941 Length=11988 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 11962 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 11903 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || |||| ||||| |||||||| || | |||||| Sbjct 11902 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 11843 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 11842 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 11783 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 11782 ATCCAGAAGGAGTCGACGCTGCA 11760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515187913314080