Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1989 113 4e-20 seq3415 102 8e-17 seq1941 100 3e-16 seq2415 96.9 3e-15 >seq1989 Length=66411 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| ||||| | ||| ||||| || || || || |||||| Sbjct 66289 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 66230 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || |||||| |||||| || ||||| || ||||| Sbjct 66229 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 66170 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 66169 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 66110 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||||| || || ||||| |||||||| Sbjct 66109 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 66063 >seq3415 Length=158045 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | || | || ||||| | || ||||| ||||| ||||| || ||| Sbjct 55376 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 55317 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || |||||||| || || ||| |||| ||||||||||| || || || Sbjct 55316 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 55257 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | ||| || Sbjct 55256 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 55197 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 ||| | ||| | ||||||||| || | || || || || |||||| Sbjct 55196 CTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 55151 >seq1941 Length=11988 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || |||||||| | ||| | || ||||| | ||| ||||| || || || || |||||| Sbjct 11733 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCG 11792 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || |||||||| || ||||| |||||| || ||||| || ||| Sbjct 11793 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGA 11852 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | || || | | ||| Sbjct 11853 GGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTC 11911 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | |||||||||||||| || || ||||| ||||||||| Sbjct 11912 GACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATA 11963 >seq2415 Length=48512 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| ||||| ||||| || ||| || |||| || ||| Sbjct 44652 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 44593 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||| ||||||||||| || || || |||||||| ||||| | Sbjct 44592 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 44533 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||||| | ||| ||||| | ||| | |||||| Sbjct 44532 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 44473 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCA 139763 || || | || || || || ||||||| Sbjct 44472 CCCGTGAGGGTCTTGACAAAGATTTGCA 44445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496033876513600