Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2544 109 7e-19 >seq2544 Length=15486 Score = 109 bits (120), Expect = 7e-19 Identities = 403/625 (64%), Gaps = 10/625 (2%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || | ||| || ||||| |||||||| || || | || ||||| | | | | Sbjct 10759 ACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACT 10818 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| ||| || ||||| | | | || | |||||||| Sbjct 10819 TCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGC 10878 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| || || | |||| || || ||||| || || || || | ||| | ||| Sbjct 10879 TCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCG 10938 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || || || | | ||| || | ||| || || || || || || |||| | Sbjct 10939 GTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTCGTGCCGGCG 10998 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || ||| || | || || || ||| || | ||| || || || || | || Sbjct 10999 ATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTG 11058 Query 72322 GAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||| | ||||| ||| |||| ||| || || ||||| || || ||||||| |||| Sbjct 11059 GAGATGAGCGCGCA-CGTCTTAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCAT 11117 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440 | | || |||||| || | || | || ||||| || || || | || || Sbjct 11118 CGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 11177 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT-CAATAGCTGATTCTA 72499 || ||||| ||||| | || |||| || ||||||| || ||| | | | | | Sbjct 11178 CGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGCAAGACGCGCT-CAA 11236 Query 72500 TATCCCATTGA---TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556 | || ||| || || || || ||||||||||| | ||| || || || | ||| Sbjct 11237 TGTCG---TGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGCGGGCGTTCGG 11293 Query 72557 CGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616 ||| |||| | || | ||||||||| ||| | ||||| || ||||| |||| Sbjct 11294 CGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGT 11353 Query 72617 TGTATGAAAAGTCTCGTTCGTAAAT 72641 |||| || || || ||||| || Sbjct 11354 TGTAGCCGAAATCGCGGTCGTAGAT 11378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671098445072080