Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1989 105 7e-18 seq1941 105 7e-18 seq2415 98.7 1e-15 seq3415 96.9 3e-15 seq2405 82.4 8e-11 >seq1989 Length=66411 Score = 105 bits (116), Expect = 7e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| || || || || |||||||| |||| ||||| | || || ||||||||||| Sbjct 66260 CGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCC 66201 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | ||||||||||| |||||||| || || || ||||| || || ||| Sbjct 66200 AGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTT 66141 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || || || || || || | || | ||||||||||||| || Sbjct 66140 GACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGT 66081 Query 64426 TTTTACGAAAATTTGCATTTTAATAA 64451 || ||||| |||||||| | || || Sbjct 66080 CTTGACGAAGATTTGCATCTGAACAA 66055 >seq1941 Length=11988 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || || |||||||| |||| ||||| | || Sbjct 11751 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 11810 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | ||||||||||| |||||||| || || || || Sbjct 11811 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 11870 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || || ||| ||| || | |||| ||| || || || || | || | | Sbjct 11871 TGAATCTTAGCCTTGACATTGTCGATCGTAT--CCGACGACTCGACCTCGAGCGTGATCG 11928 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| || || ||||| |||||||| Sbjct 11929 TCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11962 >seq2415 Length=48512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || || | |||||| | || || |||||||||||| Sbjct 44640 GTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCG 44581 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || |||||||| || || || ||||| || ||||| || || ||| Sbjct 44580 GCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTG 44521 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || || || | || | ||||||||| || | || Sbjct 44520 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 44461 Query 64427 TTTACGAAAATTTGCATTTTAA 64448 || || || ||||||| | ||| Sbjct 44460 TTGACAAAGATTTGCACTGTAA 44439 >seq3415 Length=158045 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || || | |||||| | || || |||||||||||| Sbjct 55345 GTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCG 55286 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||| || |||||||| || || || ||||| || ||||| || || Sbjct 55285 GCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 55233 >seq2405 Length=70258 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| |||| || || | || Sbjct 69832 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCC 69891 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | ||||||||||| || ||||| ||||| || || Sbjct 69892 TCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 69951 Query 64352 TGTATTTT 64359 || || || Sbjct 69952 TGAATCTT 69959 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| |||| ||||| | || Sbjct 70060 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 70119 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| || || ||||| || ||||| || || || || Sbjct 70120 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTATCC 70179 Query 64352 TGTATTTT 64359 || || || Sbjct 70180 TGGATCTT 70187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499614459069520