Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2405 113 4e-20 seq3415 100 3e-16 seq2415 93.3 4e-14 >seq2405 Length=70258 Score = 113 bits (124), Expect = 4e-20 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| || || ||||| | || ||| | || ||||| || ||||| ||||| || || Sbjct 69810 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTA 69869 Query 45167 ATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 ||| || || ||| || | || || || ||| | |||||||| |||||||| Sbjct 69870 ATCCGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 69929 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285 || ||||||||||| || || ||||| || |||| || | || | ||||| || | Sbjct 69930 TGGGGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACG 69988 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| || | ||| ||||| || || || || ||||| || ||||| Sbjct 69989 ACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 70043 >seq3415 Length=158045 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | ||| ||| || | || Sbjct 55351 TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 55292 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 55291 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 55232 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | ||| ||||| || Sbjct 55231 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 55173 Query 45317 TAGAGTTTTTACAAAAATTTGC 45338 ||||| || ||||| |||||| Sbjct 55172 AAGAGTCTTGACAAAGATTTGC 55151 >seq2415 Length=48512 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | ||| ||| || | || Sbjct 44646 TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 44587 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 44586 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 44527 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | || ||||| || Sbjct 44526 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 44468 Query 45317 TAGAGTTTTTACAAAAATTTGCA 45339 || || || ||||| ||||||| Sbjct 44467 GAGGGTCTTGACAAAGATTTGCA 44445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451975752105680