Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2544 100 5e-16 >seq2544 Length=15486 Score = 100 bits (110), Expect = 5e-16 Identities = 165/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 203837 GTCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACA 203894 |||||| || || ||||||| || || ||||| |||| || | | || ||||||| Sbjct 9317 GTCTTGGTCGACGGTGAACTTGATCGCACCAACGGC-GGCCCGCGTGCGCAAGTAGTACA 9375 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACG 203953 |||| ||||| || || ||| ||| ||||| | |||||| || | || | || || Sbjct 9376 TGCCCGTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCG 9435 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 ||||| || | || ||| ||||| || || || ||||| ||| ||||| || || || Sbjct 9436 TTGGGCTC-GACAAGTGGATGTTAAGCGATTGCGACTGGTCAATG-AAGGCACCTCGGTC 9493 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||| || | |||||| ||||| ||||| | |||||| || |||||| Sbjct 9494 GGCGGACAAGTCGATAATAGTCTTTTGCGAGAGCTCCCAGACGGTCTTG 9542 Score = 91.5 bits (100), Expect = 2e-13 Identities = 340/525 (65%), Gaps = 6/525 (1%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 |||||| || || ||| ||||| || | | || |||||||| || | || | | || Sbjct 10764 CTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTC 10823 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | |||||| || || | | |||||||||||||||||| | Sbjct 10824 CTTGCCGTGGTTCTTGCGAAGGTCCAGG-AATTCGAAGACGTCGGCGTGCCACGGCTCGA 10882 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | || | || || || | |||||| ||||| ||||| || ||| | | Sbjct 10883 GGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGT 10942 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| | || || ||||| || || | ||||| | | |||||||||| | |||| Sbjct 10943 TGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 11002 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 ||||| || | | |||| |||| | || || || || | ||||| || Sbjct 11003 AGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGA 11062 Query 205464 TCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 | | |||||| |||| || ||| ||| |||||| | || ||||| ||| || || Sbjct 11063 TGAGCGCGCACGTCTT-AAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTG 11121 Query 205523 ACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCT 205581 ||||| | || || | |||| || || || || |||| ||||||||| || Sbjct 11122 ACCAGGAAACAGGACGAAAGCTGCGGGTGAG-GCGTTCCGGCGTTGAAGAGCGTCGGCGA 11180 Query 205582 GGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATC 205641 ||||||| | ||| |||| || | |||| | || || |||| ||| | || Sbjct 11181 GGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGCAAGACGCGCTCAATGTC 11240 Query 205642 GAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGG 205686 | ||||| || || | ||||| | ||||| | |||||| || Sbjct 11241 GTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGCGG 11285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795106914200480