Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2544 174 2e-38 seq1502 134 2e-26 seq2146 131 2e-25 seq2472 104 3e-17 >seq2544 Length=15486 Score = 174 bits (192), Expect = 2e-38 Identities = 530/808 (66%), Gaps = 21/808 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| ||||||| ||||| |||| ||||| || | || ||||| || Sbjct 11286 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 11227 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || || | |||||| | || || |||| Sbjct 11226 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTT-ACCCACGCCTCGCCGACGCTCT 11168 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 11167 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATG 11108 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | |||||||||| ||| || | || || | ||||| ||| || | Sbjct 11107 ATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCG 11048 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 |||||||||| || |||||| | || | || | | | ||| || | | || || Sbjct 11047 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACC--GGCTCCTACATCGCCGGCAC 10990 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 10989 GAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTA 10930 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 10929 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 10873 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | || ||||| || | || ||||| || | ||||| | || Sbjct 10872 GCACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCG 10813 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||||| || ||||||||||| ||||| |||||| || | || ||| Sbjct 10812 CGCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAG 10755 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| ||||| ||||||| || || | | | || ||||| || ||| | | Sbjct 10754 GCCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTACACGAAGTCTAT 10695 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || |||||||| ||| | | | || ||||| | || | || || | ||| Sbjct 10694 GGCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACG 10635 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || ||||| | | || ||| ||||| | || Sbjct 10634 ATCCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCC 10576 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||| |||||||||||| ||| | || || ||||||||| | || ||| Sbjct 10575 TTTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGAT 10516 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATC 112406 |||| || ||||| || || || ||| Sbjct 10515 CAAGTCGTCGAACCTGTGCACCGAGATC 10488 >seq1502 Length=38635 Score = 134 bits (148), Expect = 2e-26 Identities = 281/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 12398 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 12457 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 12458 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 12517 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||| | ||||| ||| || ||| ||| ||| | ||||| Sbjct 12518 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 12577 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 13830 ||| || || ||| | || ||| ||| |||||| || | ||||||| || | | || Sbjct 12578 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 12636 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 12637 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 12696 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 13950 ||||||| ||||| ||||| || || | ||||||| ||| | || || | Sbjct 12697 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 12756 Query 13951 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 14006 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 12757 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 12812 >seq2146 Length=46347 Score = 131 bits (144), Expect = 2e-25 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 12447 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 12506 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 12507 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 12566 Query 176843 TTCTTGAGATCG-TTGAACTCTTGG-TTTGATG-TGAGCTGTGTGACAGAGGCATCACGA 176899 | ||| ||||| ||||| ||| || ||| | ||| | || | | || ||||| Sbjct 12567 TGCTT--GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 12623 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||| ||||| |||| || ||||| || |||| Sbjct 12624 ACGTTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCC 12683 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 12684 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 12743 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 || | | | |||||| || ||||||||||| || Sbjct 12744 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 12778 >seq2472 Length=42034 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || |||||| ||| | || || Sbjct 5485 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 5544 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 5545 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 5604 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 5605 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 5664 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 5665 CCACGAGTCCCC 5676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620704705417760