Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2544 158 1e-33 seq1502 140 4e-28 seq2472 113 5e-20 seq2146 82.4 9e-11 >seq2544 Length=15486 Score = 158 bits (174), Expect = 1e-33 Identities = 557/862 (65%), Gaps = 16/862 (2%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| || || ||| ||| | | |||||| | || || Sbjct 10435 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 10494 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || ||| ||||| || | |||||||||||| || ||||| Sbjct 10495 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 10554 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || || ||||||||||| | || | || || || ||| | | ||||| || | | Sbjct 10555 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 10614 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | ||| || | | | ||||| || |||||| ||||| || | | Sbjct 10615 CAAAGCTTTTGCGCGGGGATCGTTTTC-TTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 10673 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | ||| |||||||| || | ||| || || || || | | | || ||||| Sbjct 10674 CAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAA 10733 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 |||| ||| | || | |||| || |||| ||||||||| || |||||||| || | Sbjct 10734 GAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGC 10793 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | ||| | || || | || ||||| || | || ||||| Sbjct 10794 AAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 10853 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 || | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 10854 TTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGG---GACGCTT 10910 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| ||| | || || ||||| || | ||| Sbjct 10911 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAAT 10970 Query 106996 ACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATGG 107053 || | || | || || || || ||| || ||| | || | | | ||| Sbjct 10971 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGG--TCGCGCGGATGTTGTGG 11028 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 ||| || || ||||| || || ||| ||||| |||| ||| | |||| || | Sbjct 11029 ATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCG 11088 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 || || || | || || || ||||| | | || ||||| || || | |||||| Sbjct 11089 TAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 11148 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 107233 || || || || |||||||| || || | ||||| | || | | |||||| Sbjct 11149 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATA 11208 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || ||| | || |||||| |||||||| | ||||||||||||| ||| |||||| Sbjct 11209 AGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGC 11268 Query 107294 ATAAACATGTATTG-GGGTGTT 107314 || | ||||| ||| ||| ||| Sbjct 11269 ATGAGCATGTGTTGCGGGCGTT 11290 >seq1502 Length=38635 Score = 140 bits (154), Expect = 4e-28 Identities = 282/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 12398 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 12457 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 12458 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 12517 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||| | ||||| ||| |||||| ||| ||| | ||||| Sbjct 12518 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 12577 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCA 7137 ||| || || ||| | || ||| ||| ||||||||| | ||||||| || | | || Sbjct 12578 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 12636 Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 12637 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 12696 Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAG 7257 ||||||| ||||| ||||| || || | |||||| ||| | || || | Sbjct 12697 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 12756 Query 7258 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 7313 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 12757 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 12812 >seq2472 Length=42034 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || |||||| ||| | || || Sbjct 5485 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 5544 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 5545 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 5604 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 5605 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 5664 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 5665 CCACGAGTCCCC 5676 >seq2146 Length=46347 Score = 82.4 bits (90), Expect = 9e-11 Identities = 227/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||| ||||| || ||||| | ||| ||| | ||| ||||| || || Sbjct 12452 GATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 12511 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 12512 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 12571 Query 169298 GAGATCG-TTGAACTCTTGG----TTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || | || | | ||| ||| | | || || || || Sbjct 12572 --GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGC--CCGCCGCTTCACGCACG 12626 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| || || ||||||| || || || ||||| | ||| Sbjct 12627 TTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCCAGA 12686 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT--TC 169470 |||| ||| || || | || || ||||| || || || | ||||| || ||||| | Sbjct 12687 CCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTGGAC 12746 Query 169471 CAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTG 169511 | | | | |||||| || ||||| || || || | |||| Sbjct 12747 CCG--TTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTG 12785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589944973415920