Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2415 105 4e-18 seq3415 98.7 6e-16 seq2405 91.5 1e-13 >seq2415 Length=48512 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| | | | | || |||| || Sbjct 44652 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 44593 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || |||||||||||| |||| | || |||||||| Sbjct 44592 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 44533 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| ||||| || Sbjct 44532 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 44473 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCA 34980 |||||||| ||||| |||||||| |||| Sbjct 44472 CCCGTGAGGGTCTTGACAAAGATTTGCA 44445 >seq3415 Length=158045 Score = 98.7 bits (108), Expect = 6e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| | | | | || |||| || Sbjct 55357 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 55298 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || |||||||||||| |||| | || |||||||| Sbjct 55297 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 55238 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| || || || Sbjct 55237 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 55178 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGC 34979 ||||| |||||||| |||||||| ||| Sbjct 55177 CCCGTAAGAGTCTTGACAAAGATTTGC 55151 >seq2405 Length=70258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| || |||| || | || |||| || Sbjct 69835 ACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCCTCG 69894 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | ||| ||||||||| | || | || |||||||| | Sbjct 69895 AGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGA 69954 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| || || || || Sbjct 69955 ATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCTTG 70014 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| ||||||||||||||| Sbjct 70015 CCCGTAAGCGTCTTGACAAAGATCTGCATA 70044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324614379459024