Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2544 217 3e-51 seq2236 95.1 2e-14 >seq2544 Length=15486 Score = 217 bits (240), Expect = 3e-51 Identities = 784/1214 (65%), Gaps = 37/1214 (3%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || ||||||||||||||||| ||||| ||||||||| | |||||||| ||| | Sbjct 10171 GCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAATCG 10230 Query 221483 AAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGG 221540 || ||||| ||| || |||| | ||||||| || || || |||||||| ||||||| Sbjct 10231 AACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGATGG 10288 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | | ||| | |||||| ||| || |||||||| ||||||||||||| | Sbjct 10289 GGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGA 10348 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 ||| | ||| | || || ||| || || |||||| || |||| || || Sbjct 10349 TGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTC------TTAAAGT 10402 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 | || ||||| | | || | | || | || ||| | || ||||| || Sbjct 10403 CGTACACGCCGTC--CTTGATGAAGCTCGGC-AACGCG--------ATCG-AGGCCAAGT 10450 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGC 221780 | || ||||| ||||||| | |||| |||||||| || || ||||| Sbjct 10451 TGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACG 10510 Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 ||||||| || || || | || || || || || || || ||||| |||||||||| Sbjct 10511 ACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCA 10570 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC 221900 |||| || |||||| || | ||| || | |||||| || ||| || | | ||| Sbjct 10571 TAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGG 10630 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC---AA 221957 | ||| ||||| | ||||| |||||| || | | || || | | | Sbjct 10631 GGATCGTTTTCTTGGCGCGGCCCTC---CTTTTCGTA---TTTCTCGAACAAGGCGCGGA 10684 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || || | |||| ||||| || |||||| || | ||| ||| | Sbjct 10685 ACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAAT 10744 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | | | | ||| | || |||||| || || || ||||| ||||| ||||||| Sbjct 10745 CGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGAT 10804 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | | || |||||| ||||| ||| || | || |||| || || || | || Sbjct 10805 CACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGT 10864 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 | |||||||||||||| || |||| || | || ||||| |||||||||||||| || | Sbjct 10865 CGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGT 10924 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 | || | | | |||| ||| || || | || || | ||||| || | Sbjct 10925 CGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGC 10984 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATA 222316 |||| ||||| ||||| | ||| || | | ||| ||| | || |||||| Sbjct 10985 CGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCGATA 11043 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 ||||||||| || ||||| | ||||| |||| || ||||| ||||| || || Sbjct 11044 CCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCAATC 11103 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 || || ||||| | | | ||| ||||| ||||| | ||| | | | | | |||| Sbjct 11104 GAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCG 11163 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || || ||||| || |||||| |||||||||| | ||||| || | ||||| || Sbjct 11164 TTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGC 11223 Query 222497 ACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGG 222556 | ||| | | |||| || ||||| || | |||| | |||| ||||| || Sbjct 11224 AAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGC 11283 Query 222557 GGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 || | || | |||| | | | || |||| ||| || ||| || || |||| Sbjct 11284 GGGCGTTCGGC--GACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTTGA 11341 Query 222615 ACCCAAAGTAGTTG 222628 | |||||||||||| Sbjct 11342 AGCCAAAGTAGTTG 11355 >seq2236 Length=166925 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 25488 GTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACAT 25547 ||||||||||||| | || ||||||||||||||||| || ||| |||||||||| Sbjct 93322 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 93263 Query 25548 GGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTG 25602 | ||| |||| || |||| | || ||||||| | || || | |||| | Sbjct 93262 GCACGACTGGGACAACAAGCTCAAGCC--CGACGAGCGCTACTTCATCTCGCACGTCCTC 93205 Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || || || || ||||| || || || || |||||||| || |||| ||||| | | Sbjct 93204 GCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGT 93145 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || || |||| | ||||| || ||||||||||| || || Sbjct 93144 GAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAAT 93101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928788395899520