Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011535.1_202016-07-08] 4,783 sequences; 26,146,073 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2433 122 8e-23 seq1217 116 3e-21 seq2148 105 6e-18 >seq2433 Length=109699 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | || || ||||| || | || |||||| | ||| | | Sbjct 39158 CGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCA 39099 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| |||| ||||| ||||| ||||| ||||| ||| Sbjct 39098 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 39039 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | | ||||| || | |||||| Sbjct 39038 TCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATC 38979 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || || |||||||||||||| Sbjct 38978 GTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 38944 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | || || ||||| || | ||| ||||| | || | | Sbjct 39614 CGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCA 39555 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| |||| ||||| ||||| ||||| ||||| ||| Sbjct 39554 TCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 39495 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | ||||||| | ||| ||||| | ||||| || | |||||| Sbjct 39494 TCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATC 39435 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || || |||||||||||||| Sbjct 39434 GTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 39400 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | || || ||||| || | ||| |||||| | ||| | | Sbjct 39386 CGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCA 39327 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||| || ||||| ||||| || || || Sbjct 39326 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTA 39267 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | | ||||| || | |||||| Sbjct 39266 TCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATC 39207 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 39206 GTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 39172 >seq1217 Length=66466 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||| || || ||||| || | || |||||| | ||| | |||||| Sbjct 141 ACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCG 200 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| |||| ||||| ||||||||||| || || ||||| | Sbjct 201 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 260 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | ||| ||||| | | ||||| || | |||||| || || Sbjct 261 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 320 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||| Sbjct 321 CCGGTCAGGGTCTTGACGAAGATTTGCAT 349 >seq2148 Length=14236 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||| | || | ||||||||||| || || ||||| || | || |||||| Sbjct 254 TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 195 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | |||||| ||||| || || | ||||| |||| ||||| |||||||| Sbjct 194 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGG 135 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| || || ||||| | ||| || |||||||| | ||| || || | ||||| Sbjct 134 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGAC 75 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||| || || || || || || || || ||||| ||||| Sbjct 74 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448264397789880