Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011535.1_202016-07-08] 4,783 sequences; 26,146,073 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2433 141 1e-28 seq2148 129 6e-25 seq1217 122 9e-23 seq2090 118 1e-21 seq2875 113 5e-20 >seq2433 Length=109699 Score = 141 bits (156), Expect = 1e-28 Identities = 176/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | | ||||| |||||| || | || |||||| || || ||||| Sbjct 39633 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTA 39574 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || || || || | || || |||||||| || ||||| || | |||||||||||| Sbjct 39573 ATCCGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 39514 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTC 42152 | || | || ||||||||| ||| | || || |||| ||| | | | |||||| | Sbjct 39513 TGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAC 39456 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||| |||||| || |||||||| |||||||| |||||||| ||||| Sbjct 39455 GACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 39400 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| || | || |||||| || ||||||||||| || || || || | Sbjct 39159 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 39100 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || | |||||||||||| | || | || ||||| Sbjct 39099 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 39040 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | |||||| || || || |||| ||||| Sbjct 39039 GTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 38981 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| |||||||| |||||||| ||||| Sbjct 38980 TCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 38944 >seq2148 Length=14236 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||| |||| || |||||| || ||||||||||| || Sbjct 253 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 194 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| |||||||| || | |||||||||||| | || Sbjct 193 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGA 134 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| | || | |||| | | | ||| || ||| || || Sbjct 133 ATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGAC 75 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 74 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 27 >seq1217 Length=66466 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | ||||| |||| || |||||| || ||||||||||| || Sbjct 122 ACCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 181 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 182 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGG 241 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || ||||||||| ||| || |||| ||| | | | |||||| || || | Sbjct 242 AATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 300 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 301 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 349 >seq2090 Length=47937 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 3878 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 3937 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || |||||||| | || | || |||||||| ||| || |||| ||| Sbjct 3938 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 3996 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| ||| || || |||| |||||||| |||||||| || ||||| | Sbjct 3997 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 4056 Query 42196 CAAAGATTTGCA 42207 |||||||||||| Sbjct 4057 CAAAGATTTGCA 4068 >seq2875 Length=107407 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 55283 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 55224 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || |||||||| | || | || |||||||| ||| || |||| ||| Sbjct 55223 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 55165 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 55164 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 55105 Query 42196 CAAAGATTTGC 42206 ||||||||||| Sbjct 55104 CAAAGATTTGC 55094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543180322664720