Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011535.1_202016-07-08] 4,783 sequences; 26,146,073 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2875 114 1e-20 seq2090 104 2e-17 seq2799 87.8 2e-12 >seq2875 Length=107407 Score = 114 bits (126), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | || || || | | | ||||||||||| |||||||||||| Sbjct 55319 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 55260 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 55259 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 55200 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| Sbjct 55199 GATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCG 55142 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | ||| || || || ||||| || ||||| || ||| || Sbjct 55141 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTG 55091 >seq2090 Length=47937 Score = 104 bits (114), Expect = 2e-17 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || || || | | | ||||||||||| |||||||||||| | Sbjct 3843 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 3902 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 3903 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 3962 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| | Sbjct 3963 ATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 4020 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 |||||| || | || || || || || || || ||||| || |||| Sbjct 4021 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 4068 >seq2799 Length=114060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAA 52756 ||||||||||| || || || || ||||||| | || ||||| || ||| || || Sbjct 52067 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 52009 Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816 ||| || || ||||| |||||||| | || ||||| ||||||||||| ||||| || Sbjct 52008 CGCCGAGAACCCCTTTGACTTTATGAATATGATCTCGCTCGAGGGCAAGACAAACTTCTT 51949 Query 52817 CGAGAAGCGAGT 52828 ||||||||| || Sbjct 51948 CGAGAAGCGTGT 51937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232729711760