Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900012385.1_202016-07-08] 4,708 sequences; 27,248,364 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3347 149 5e-31 >seq3347 Length=202498 Score = 149 bits (164), Expect = 5e-31 Identities = 197/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACTCTGCTCCGA 30172 || |||||| ||||| ||||| || || || | |||| | |||||||| |||| Sbjct 180802 CAACTGATCGACCCCTTTCCCCTGATAATCATCCTTGGCCGTCC-TATACTCTGCGCCGA 180860 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30232 ||||||||||||||||||| || ||||||||||| || ||||||||||| || | || | Sbjct 180861 AATGCCTCCACTGGAACCCATAAACCGGTCCCAGATCCCCCTCTTCCCTATGACCCAACC 180920 Query 30233 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30292 | ||| |||| ||| | ||| || || || | ||||| || || |||||||| |||| Sbjct 180921 CAACCTTATCCAGAAACTGTCTCGATCCATTCCCATCCCAAATTTTGACCCCCTTGTCGG 180980 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30352 | | ||| || | || || |||| |||||||| ||||| ||||| | || | Sbjct 180981 ACAATAATTTCGAATCGGTCGATCCTCGAACGAACCAAAGCAGTTCCTCAATGATACCTC 181040 Query 30353 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | ||||||| ||||||| || | ||||| Sbjct 181041 GCGTAAAGACCTTCTTGGTGGTCAAAAGGGG 181071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594154032884