Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900012385.1_202016-07-08] 4,708 sequences; 27,248,364 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2629 107 1e-18 seq2379 98.7 7e-16 seq4035 93.3 3e-14 >seq2629 Length=47894 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||| | |||| || || || || ||||||||||| || || ||||| ||||| || || | Sbjct 4058 TTACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 3999 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | ||||| | || || | || || || | | ||||| ||||| | |||||| Sbjct 3998 CGTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCA 3940 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || || ||| | || ||||||||||| || || || || | ||||| || | ||| Sbjct 3939 GACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGAC 3880 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| ||||| || Sbjct 3879 TACAACATCCAAAAGGAGTCGAC 3857 >seq2379 Length=107647 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || || || || || || ||||| || |||||||| ||||| || || || | || Sbjct 52477 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 52418 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| | || || | || || || | | ||||| ||||| | |||||||| || | Sbjct 52417 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 52359 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| || | ||| ||||||| Sbjct 52358 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 52299 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 52298 TCCAAAAGGAGTCGAC 52283 >seq4035 Length=102862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || || || Sbjct 69982 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69923 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | || ||||| ||||| | || ||||| || Sbjct 69922 GACACGATCGACAACGTCAAGACCAAGA-TTCAGGACAAGGAAGGCATTCCCCCAGACCA 69864 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || ||||| || || || || | || || | | |||||||| Sbjct 69863 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 69804 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 69803 CATCCAGAAGGAGTCGAC 69786 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || ||| || Sbjct 70210 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70151 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | || || || || | || ||||| || Sbjct 70150 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGATAAGGAGGGCATTCCCCCAGACCA 70092 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || ||||| || || || || | ||||| | | ||||||||| Sbjct 70091 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 70032 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 70031 CATCCAGAAGGAGTCGAC 70014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990205431664