Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq16 123 3e-23 seq28 116 4e-21 >seq15 Length=1365434 Score = 140 bits (154), Expect = 4e-28 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | || |||||| || ||||||||||| || || || || | Sbjct 785117 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 785058 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || ||||| Sbjct 785057 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 784998 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || || |||| ||| | | | |||||| || || || |||| |||| Sbjct 784997 GTCC-TGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTG 784940 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||||||| |||||||| |||||||| ||||| Sbjct 784939 ATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 784902 Score = 140 bits (154), Expect = 4e-28 Identities = 175/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | | ||||| |||||| || | || |||||| || || |||||| Sbjct 785362 TATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAA 785303 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || || || | || || |||||||| || ||||| || | |||||||||||| Sbjct 785302 TCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCT 785243 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCG 43128 | || | || ||||||||| ||| | || || |||| ||| | | | |||||| || Sbjct 785242 GGGGGAATGCCTTCCTTGTCC-TGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACG 785185 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||| |||||| || |||||||| |||||||| |||||||| ||||| Sbjct 785184 ACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 785130 Score = 138 bits (152), Expect = 1e-27 Identities = 176/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| ||||| |||| | ||| | |||||| |||| || |||||| |||||||||| Sbjct 536140 CCTACTGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGT 536081 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 |||| || || || || | || || |||||||| ||||| || || | ||||||||||| Sbjct 536080 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGT 536021 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCT 43126 | | || | || |||||||||| ||| | || | |||| ||| | | | ||| || Sbjct 536020 CTGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATCGTATCCGA 535963 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || |||| ||| || || ||||| || || ||||| || ||||||||||| Sbjct 535962 CGACTCGACCTCGAGCGTAATCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 535906 Score = 136 bits (150), Expect = 5e-27 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | || |||||| || || |||||||| || || || || | Sbjct 784889 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCC 784830 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | |||||||||||| | || | || ||||| Sbjct 784829 ATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 784770 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || || |||| ||| | | | |||||| ||| || || |||| |||| Sbjct 784769 GTCC-TGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTG 784712 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||||||| |||||||| |||||||| ||||| Sbjct 784711 ATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 784674 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | |||||| |||| || |||||| || ||||||||||| || Sbjct 535904 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 535845 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 535844 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 535785 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| || |||| ||| | | | |||||| ||| || || Sbjct 535784 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGAC 535726 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 535725 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 535678 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | |||||| |||| || |||||| || ||||||||||| || Sbjct 535676 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 535617 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 535616 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 535557 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| || |||| ||| | | | |||||| ||| || || Sbjct 535556 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGAC 535498 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||| || ||||| || || ||||| || || |||||||| Sbjct 535497 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 535450 >seq16 Length=1730088 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || ||||||||| || ||||| || |||| || || | || || Sbjct 1516914 CACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTC 1516855 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || ||||| || |||||||| | ||| | || |||||||| Sbjct 1516854 GAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTG 1516795 Query 43094 GATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | ||||||| ||| || || |||| |||||||| | Sbjct 1516794 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCT 1516736 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 ||||||| || ||||| ||||||||||||| Sbjct 1516735 TGCCCGTGAGGGTCTTGACAAAGATTTGCA 1516706 >seq28 Length=4051571 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 141542 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 141483 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || |||||||| | ||| | || |||||||| ||| || |||| ||| Sbjct 141482 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 141424 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 141423 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 141364 Query 43171 CAAAGATTTGC 43181 ||||||||||| Sbjct 141363 CAAAGATTTGC 141353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817335534360