Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19 116 5e-21 seq28 100 4e-16 >seq19 Length=1040457 Score = 116 bits (128), Expect = 5e-21 Identities = 176/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| |||||| |||| || |||||||| | ||||||| | || ||| Sbjct 930060 ATCTGGGCACAGTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTG 930001 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 930000 TCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 929942 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || ||||||||||| || || | || Sbjct 929941 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCG 929882 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| ||||| ||||| || |||||||| Sbjct 929881 ATTCTCTGGTGAG--GTCCAGTCAGCCGAGG-CTCGATGCTTCTACGGTTTTCAAATCAT 929825 Query 125255 GAT 125257 ||| Sbjct 929824 GAT 929822 >seq28 Length=4051571 Score = 100 bits (110), Expect = 4e-16 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | ||||| || | |||||| || Sbjct 4025908 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGACTTGTCCGCCGACCGA 4025849 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || |||||||||| |||||| | || | || ||| |||||||| | | | Sbjct 4025848 GGTGCCTTCATTGACCAGTCGCAATCGCTTAACATCCAC-TTGTCGAGCCCAACGA-TGG 4025791 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | | || ||||| ||||| |||| ||||| | || || ||||| |||||||||| Sbjct 4025790 CGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAGAGGACTGAAGACCGGCATGTACT 4025731 Query 98215 A 98215 | Sbjct 4025730 A 4025730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058857260120