Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq15 122 8e-23 seq16 118 9e-22 seq28 109 5e-19 >seq15 Length=1365434 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || |||||||| Sbjct 535450 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 535509 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 535510 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 535569 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| | | |||||||||| Sbjct 535570 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 535629 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || ||||| Sbjct 535630 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 535661 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || |||||||| Sbjct 535678 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 535737 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 535738 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 535797 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| | | |||||||||| Sbjct 535798 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 535857 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || ||||| Sbjct 535858 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 535889 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || | || || |||| || |||||||| Sbjct 535906 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACGATTACGCTCGAGGTCGAGTCGTCG 535965 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | || || | ||| ||||| || || ||||| || || Sbjct 535966 GATACGATCGACAACGTCA---AGGCTAAGATTCAG-GACAAGGAGGGCATTCCTCCAGA 536021 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||| ||||| || | || |||| ||||| | | |||||| Sbjct 536022 CCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTA 536081 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||||| || || || ||||| || || ||||| | || |||| ||| Sbjct 536082 CAATATTCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGA 536133 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | ||||| |||| || ||||| || Sbjct 784902 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 784961 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 784962 GACACGATCGACAACGTCAAGACCAAGATTCAG-GACAAGGAAGGCATTCCCCCAGACCA 785020 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | || |||| ||||| | | ||||||||| Sbjct 785021 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 785080 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || ||||| || || ||||| Sbjct 785081 TATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 785113 >seq16 Length=1730088 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||| ||||||| ||||| ||||| | || || || ||||||| |||| || |||||| Sbjct 1516702 ACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCG 1516761 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||||| | ||| || ||| ||||| ||||| || || || ||| Sbjct 1516762 TCCGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGAC 1516821 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || | || |||| ||||| ||| ||| ||| Sbjct 1516822 CAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTAC 1516881 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || ||||| Sbjct 1516882 AACATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 1516916 >seq28 Length=4051571 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| ||||| |||||| | || || || | ||||| |||| || |||||||| || Sbjct 141353 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 141412 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 ||| ||||| | ||| || ||| ||||| ||||| || || || ||||| || Sbjct 141413 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 141472 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || ||||||||||| || | || |||| ||||| ||| ||| ||||| || Sbjct 141473 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 141532 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || Sbjct 141533 CCAAAAGGAGTCGACCCTCCACTTGGTCCT 141562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327804596155