Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 349 7e-91 seq19 136 7e-27 >seq28 Length=4051571 Score = 349 bits (386), Expect = 7e-91 Identities = 845/1265 (67%), Gaps = 32/1265 (3%) Strand=Plus/Plus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| |||||||||||||||||| |||||| | | || |||| | Sbjct 4026526 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTCGGGC 4026585 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 4026586 GAATCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCG 4026645 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| || ||| ||||| || ||||| ||||| Sbjct 4026646 ATGGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCG 4026705 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| || | || ||||||| Sbjct 4026706 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTCTTAAAGTCG 4026765 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | |||| || ||| ||| ||| || | ||| |||| Sbjct 4026766 TACACGCCG---TCCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCC 4026807 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||||||||| ||| |||| | ||||| || ||||||||||| ||||| Sbjct 4026808 AAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTC 4026867 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||| ||||| || | || || || || || ||| |||||| |||||| Sbjct 4026868 GACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAG 4026927 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCT 244869 ||||| || || || || |||| |||||| | || | ||| || ||| || | Sbjct 4026928 AGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGC-GTACCAAAGCTTTTG 4026986 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 || || ||| | || |||||| ||||| | ||| ||| ||| Sbjct 4026987 CGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAA 4027046 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| |||| |||| |||||||||| || ||||| | |||| ||| || Sbjct 4027047 CTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATC 4027106 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| || ||| ||| | || |||||| || ||||| |||||||| || |||||| || Sbjct 4027107 GCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATC 4027166 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| | || |||| || || |||||||| Sbjct 4027167 ACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTC 4027226 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||||| Sbjct 4027227 GGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTC 4027286 Query 245170 CACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | || |||| ||| || || | || || |||||||| |||| ||| Sbjct 4027287 GACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCC 4027346 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||| ||||| |||||||| ||| | | | || |||| |||| || || | || Sbjct 4027347 GTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACC 4027406 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| |||||||||||| ||||| |||| | ||||| ||||| || || Sbjct 4027407 ACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCAATCGA 4027466 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 || |||||| ||| ||| || ||||| || ||||| || | || | | | ||| Sbjct 4027467 ATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTT 4027526 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGA 245468 ||| || || || ||||||||||||||||| |||| || | | ||||| ||| | Sbjct 4027527 GAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGC-GCTCGGACATAAGGTTGTACGACTGCA 4027585 Query 245469 GCAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG 245526 ||| ||| || |||| || |||||||| | |||| | |||||| |||| || Sbjct 4027586 --AGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTG 4027643 Query 245527 -GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTT 245583 |||||| ||| | | || | ||| | |||| ||||||||| |||||||| || Sbjct 4027644 CGGGCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTT 4027700 Query 245584 GAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTC 245643 ||| |||||||| |||||| || ||| || || ||||||| || ||| | || Sbjct 4027701 GAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATGACGGCGCTGTTGAGGCGGTC 4027760 Query 245644 GGCGT 245648 ||||| Sbjct 4027761 GGCGT 4027765 Score = 84.2 bits (92), Expect = 4e-11 Identities = 171/252 (68%), Gaps = 13/252 (5%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || | | ||||||||| || | || |||||||||||||||||| Sbjct 4025688 ACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCGGTCTTC 4025747 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 ||||| || |||| ||| || |||||| | ||| |||| | ||| | ||||| Sbjct 4025748 AGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT------CGTTGGG 4025801 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 |||| ||| || ||| || || || |||||| | ||||| | || || Sbjct 4025802 -----CTCG-ACAAGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCG 4025855 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||| || | ||| | ||| || || | ||| | | ||||||||||||| |||| Sbjct 4025856 GCGGACAAGTCGATAATAGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTG 4025915 Query 243977 AGGT-GCTCGGG 243987 || | ||||||| Sbjct 4025916 AGATCGCTCGGG 4025927 >seq19 Length=1040457 Score = 136 bits (150), Expect = 7e-27 Identities = 188/260 (72%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 929336 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 929277 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| |||||| ||||| Sbjct 929276 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 929217 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| | |||||| | |||||| Sbjct 929216 TC---CCACCTCGAGC-GAAGGCCTCACCCCGACACCGTCGCGCTCATCATTAAGGAGGC 929161 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| |||||||||||||| ||| | || || | || ||| || |||||||||| Sbjct 929160 CGTCGAGATCGAGAAGGAATTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCATGAA 929101 Query 42983 CCACGACCTCATGTGCAAGT 43002 | | ||||||||| ||| Sbjct 929100 TGCCAAGCTCATGTGCCAGT 929081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338763243120