Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq28 167 3e-36 seq16 129 7e-25 >seq28 Length=4051571 Score = 167 bits (184), Expect = 3e-36 Identities = 561/863 (65%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| || || || | | ||| ||| | | |||||| || || || Sbjct 4026796 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 4026855 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || |||| || || ||| || ||||| | |||||||| || || || |||| Sbjct 4026856 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 4026915 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || || |||||||||||| | || | || || || |||| | ||||| || | | Sbjct 4026916 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 4026975 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | | ||| | || | || ||||| || ||||||| ||||| || | | Sbjct 4026976 CAAAGCTTTTGCG-CGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 4027034 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG-AGCCCTGGTGCCTTATCTGGACAGA 116728 | ||| ||||| || || | || || | | || || || || | | || |||| Sbjct 4027035 CAAGGCGCGGAACTCCTCGCC-ATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGA 4027093 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 |||||| ||| | || | |||| || |||| |||||| || || || |||||||||| Sbjct 4027094 AGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCG 4027153 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | |||||||||| ||| |||| |||| || | || || || || | |||| | Sbjct 4027154 CAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 4027213 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG-- 116906 | || | || || ||||||||||| || ||||| | ||||| | || | |||| Sbjct 4027214 ATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCT 4027270 Query 116907 ----ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 ||| | |||| || || | ||| || ||| | || || ||||| || | | Sbjct 4027271 TGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAA 4027330 Query 116963 TACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTG 117020 | || | || | ||| || || || ||| || ||| | | | || | || | ||| Sbjct 4027331 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTG 4027388 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 |||| || ||| ||||| || || ||| ||||| | |||||| | | || || | Sbjct 4027389 GATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTC 4027448 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 ||| || || || ||||| ||| |||| | | || ||||| ||| ||| | || || Sbjct 4027449 GTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGG 4027508 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 || || || ||||||||||| || || | |||||| | || | | |||||| Sbjct 4027509 GTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACAT 4027568 Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||| | || |||||| |||||| | ||||| || |||| | ||| || Sbjct 4027569 AAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACG 4027628 Query 117261 CATAAACATGTATTG-GGGTGTT 117282 ||| | ||||| ||| ||| ||| Sbjct 4027629 CATGAGCATGTGTTGCGGGCGTT 4027651 >seq16 Length=1730088 Score = 129 bits (142), Expect = 7e-25 Identities = 295/433 (68%), Gaps = 17/433 (4%) Strand=Plus/Minus Query 176546 CCCTTGGAAGCCTTGATGATTGGTGTCACCA--TTGAGACCACAAACCC--CAACTTGAG 176601 ||||||| ||||||| ||| || || | | | ||| | | || ||| || |||||| Sbjct 584823 CCCTTGGTCGCCTTGACGATGGGGGTGATAAACTCGAG-CAAGAAGCCCTTCAGCTTGAG 584765 Query 176602 GAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 176661 | || || | |||| | || | |||| ||| |||||||||||||| || ||||| Sbjct 584764 CAACGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTAATGTGCGATCCATC 584705 Query 176662 GTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGATA 176721 || ||| ||| | ||| ||||||||| || || || ||| | || || || Sbjct 584704 GTGATCTTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTGTA 584645 Query 176722 ATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT 176781 | | || || || || |||||||| |||| ||||| | ||||| ||| || | ||| Sbjct 584644 AACTTTGCCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--TGT 584589 Query 176782 -GAGTTGCGCCA---CTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACA 176837 ||| | || | | || || || || || |||| || || | |||||| | Sbjct 584588 CGAGGAGGGCTTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAAGGGAAAA 584529 Query 176838 CACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAAT 176897 |||| |||| || ||||| || |||| ||||| | || ||||| | ||| ||||||| Sbjct 584528 CACCATAGTTGTCTCGACCGACGACAGCCAGACCCGAGACGGCGAGCGCCTTGGCGGAAT 584469 Query 176898 CACCCTCCGTCACGATGAGCGTACACTTT--CCAGATTGTGCCGTCCCCGCCTTGTTCGC 176955 | || || |||| ||||||||| ||||| || | | | ||| || || |||||||| Sbjct 584468 CTCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTACCAGCGTTGTTCGC 584411 Query 176956 ATCGTCCAACTTG 176968 ||| || | |||| Sbjct 584410 ATCTTCGAGCTTG 584398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506916252920