Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 282 5e-71 seq16 132 5e-26 >seq28 Length=4051571 Score = 282 bits (312), Expect = 5e-71 Identities = 523/765 (68%), Gaps = 2/765 (0%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||||||| ||||| ||| ||| || ||||| Sbjct 4027633 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGTCTTGCAGTCGTACA 4027574 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||||||| |||||| |||| || || |||||||| || ||| Sbjct 4027573 ACCTTATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 4027514 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| ||| |||||||| ||||||||||||| ||||| || |||| Sbjct 4027513 CTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCA 4027454 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| ||||| ||| ||| || | |||||||||| | |||||||||||| | Sbjct 4027453 TTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 4027394 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || ||||||||| | | | | Sbjct 4027393 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACGAACGGCTACTCGAACG 4027334 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || || || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 4027333 GCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 4027274 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||||||| | | || | Sbjct 4027273 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAAT 4027214 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 4027213 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGTGATCTCTTCTTTG 4027154 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || || |||||| | || ||| | || || ||| || Sbjct 4027153 CGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCCGCCGGCGATTGGCCTCTCT 4027094 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| ||||||||| || | ||||| || |||||||| || ||| Sbjct 4027093 TCTGCCCCGCCGAAGCCCCCGGCCTACACGAAGTCTATGGCGAGGAGTTCCGCGCCTTGT 4027034 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||| | | || |||| || | ||| Sbjct 4027033 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCGCAAAAGCTTTGG 4026975 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || || | |||||| || || || | || | ||| |||||| || | Sbjct 4026974 TACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTTTATGCTCTACAAAGACGCC 4026915 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| |||| ||||| ||||| | ||| ||||| ||| Sbjct 4026914 GCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAAGTCG 4026870 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || ||| || Sbjct 4025918 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGACTTGTC 4025859 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | ||| |||||||| || || || |||||| | || || || Sbjct 4025858 CGCCGACCGAGGTGCCTTCATTGACCAGTCGCAATCGCTTAACATCCACTTGTCGAGCCC 4025799 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| ||||||| ||||| ||||| || Sbjct 4025798 AACGATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAGAGGACTGAAGACCGG 4025739 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || || ||| Sbjct 4025738 CATGTACTACTTGCGCACGCGGGCC 4025714 >seq16 Length=1730088 Score = 132 bits (146), Expect = 5e-26 Identities = 277/407 (68%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 585617 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 585558 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||| || ||||| | | ||||| | ||| | ||||| | Sbjct 585557 AAGACGGCTCGATGCTTTGCCCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 585498 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| || ||| | Sbjct 585497 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAACG--AGCCGAA 585442 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 585441 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 585382 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | || ||||| |||| |||| | Sbjct 585381 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATT 585322 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 585321 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATC 585262 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 ||| ||||| || ||||| || || | | |||||||| || Sbjct 585261 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTG 585215 Score = 105 bits (116), Expect = 7e-18 Identities = 183/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 585462 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 585403 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || Sbjct 585402 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATG 585343 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 585342 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCG 585283 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 585282 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 585223 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| ||||| | ||||| Sbjct 585222 TTGCGTTGACCCGGCTTAAACCCATC 585197 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 583444 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 583385 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 583384 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 583335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215746912600