Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq15 111 1e-19 seq16 95.1 1e-14 seq28 91.5 1e-13 >seq15 Length=1365434 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || |||||||| || || || | || || Sbjct 784883 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 784824 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| |||||||| || || | ||||||||||| | ||| | || || |||||| | Sbjct 784823 GAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC-T 784765 Query 39195 GATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||| || |||||| || || | |||||| | Sbjct 784764 GAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 784706 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || ||||| ||||| || |||||||| ||||||| Sbjct 784705 TTGCCCGTAAGCGTCTTGACAAAGATCTGCATCT 784672 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || |||||||| || || || | || || Sbjct 785339 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 785280 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| |||||||| || || | ||||||||||| | ||| | || || |||||| | Sbjct 785279 GAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC-T 785221 Query 39195 GATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||| || |||||| || || | |||||| | Sbjct 785220 GAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 785162 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| || |||||||| ||||| Sbjct 785161 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 785130 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 535887 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 535828 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || | ||||||||||| | || | || ||| ||||| Sbjct 535827 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 535768 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| || |||||| || || | |||||| | | Sbjct 535767 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCT 535709 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||||||||| Sbjct 535708 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 535678 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 536115 CACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGCGAGCGTGCGGCCATCCTC 536056 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || | ||||||||||| | || | || ||| |||||| Sbjct 536055 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 535996 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || || |||| ||| | | | |||||| |||||| || || | ||| || | | Sbjct 535995 AATCTTAGCCTTGA-CGTTGTCGATCGTATCCGACGACTCGACCTCGAGCGTAATCGTCT 535937 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||||||||| Sbjct 535936 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 535906 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 535659 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 535600 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || | ||||||||||| | || | || ||| ||||| Sbjct 535599 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 535540 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| || |||||| || || | |||||| | | Sbjct 535539 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCT 535481 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||| || || || || |||||||||| Sbjct 535480 TGCCGGTCAGGGTCTTGACGAAAATTTGCATCT 535448 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 785111 CACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 785052 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||| | ||| | || || |||||| | Sbjct 785051 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC-T 784993 Query 39195 GATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||| || ||||| || || | |||||| | Sbjct 784992 GAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 784934 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| || |||||||| ||||| Sbjct 784933 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 784902 >seq16 Length=1730088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| ||||| || || || ||||| | || || | Sbjct 1516920 GCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCC 1516861 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || ||||| |||||||| | || | || || || Sbjct 1516860 ATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTT 1516801 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||| || |||| ||| | | | ||| ||| |||||| || || | |||| Sbjct 1516800 GTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 1516742 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | | || ||||| || || || ||||||||||||| Sbjct 1516741 TGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 1516706 >seq28 Length=4051571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || || ||| ||||| || || || ||||| Sbjct 141578 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 141519 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || || | || || ||||| ||||| ||||| || ||||| |||||||| | || Sbjct 141518 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 141459 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235 | || || ||||| ||| || |||| ||| | | | ||| ||| |||||| | Sbjct 141458 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGA 141400 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 | || | ||||| | || ||||| || || || |||||||||||| Sbjct 141399 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 141353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545406301781