Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq28 116 9e-21 seq16 113 1e-19 seq15 102 2e-16 >seq28 Length=4051571 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| |||||||||||||| ||||| || || | Sbjct 141569 GAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCG 141510 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || | |||||||| | || ||| ||||| Sbjct 141509 GCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTC 141450 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | |||| || ||| || || || || Sbjct 141449 CTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGT 141390 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGA 152097 || || |||||||| |||||||| || |||| Sbjct 141389 GATCGTCTTGCCCGTAAGAGTCTTGACAAAGA 141358 >seq16 Length=1730088 Score = 113 bits (124), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| ||||| || || | ||||| || | Sbjct 1516911 CAAG-TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGA 1516853 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||||| | || ||| |||||||| ||||| | Sbjct 1516852 GCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGA 1516793 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| || || || || || || |||| Sbjct 1516792 TCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGC 1516733 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCA 152103 ||||||| ||||| || |||| |||| Sbjct 1516732 CCGTGAGGGTCTTGACAAAGATTTGCA 1516706 >seq15 Length=1365434 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||||||||| | || | ||||| || | Sbjct 784880 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGA 784822 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | ||||||||| | | || |||||||| || |||| Sbjct 784821 GCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAA 784762 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| || || || || || || |||| Sbjct 784761 TCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCTTGC 784702 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || |||| |||||| Sbjct 784701 CCGTAAGCGTCTTGACAAAGATCTGCAT 784674 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||||||||| | || | ||||| || | Sbjct 785336 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGA 785278 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | ||||||||| | | || |||||||| || |||| Sbjct 785277 GCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAA 785218 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| || || || || || || |||| Sbjct 785217 TCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCTTGC 785158 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || |||| |||||| Sbjct 785157 CCGTAAGCGTCTTGACAAAGATCTGCAT 785130 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||| ||||||||||| | || | ||||| || | Sbjct 785108 CAAG-TGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGA 785050 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | ||||||||| | | || |||||||| || |||| Sbjct 785049 GCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAA 784990 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| || || || || || || |||| Sbjct 784989 TCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGC 784930 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || |||| |||||| Sbjct 784929 CCGTAAGCGTCTTGACAAAGATCTGCAT 784902 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||| ||||||||||| | || | Sbjct 535896 GAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCG 535837 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| | | ||||||||| | | || || || Sbjct 535836 GCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTC 535777 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | |||| || ||| || || || || Sbjct 535776 CTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGT 535717 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| ||||| Sbjct 535716 GATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 535678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820253016827