Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900015445.1_202016-12-23] 37 sequences; 30,318,316 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq15 147 2e-30 seq28 102 8e-17 seq16 100 3e-16 >seq15 Length=1365434 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| |||||||| |||||||||||| || || |||| | Sbjct 536132 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGCG 536073 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||| ||||| | ||| Sbjct 536072 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 536013 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | || || |||||| || Sbjct 536012 ATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACGTTGTCGATCGTATCCGACGACTCGAC 535954 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 535953 CTCGAGCGTAATCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 535906 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| ||||| || |||| | Sbjct 784900 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 784841 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| |||| ||||| ||||| | |||| Sbjct 784840 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 784781 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || | | ||| | | | ||||| |||||| || Sbjct 784780 ATGCCTTCCTTGTCC-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 784722 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || ||||| |||||||| || || |||||||| Sbjct 784721 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 784674 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| ||||| || |||| | Sbjct 785356 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 785297 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| |||| ||||| ||||| | |||| Sbjct 785296 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 785237 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || | | ||| | | | ||||| |||||| || Sbjct 785236 ATGCCTTCCTTGTCC-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 785178 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || ||||| |||||||| || || |||||||| Sbjct 785177 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 785130 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||||||| ||||||||| || || || |||| | Sbjct 535676 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 535617 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||| ||||| | ||| Sbjct 535616 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 535557 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | | ||||| |||||| || Sbjct 535556 ATGCCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 535498 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| |||||||| ||||| Sbjct 535497 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 535450 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| || || || |||| | Sbjct 785128 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 785069 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| |||| ||||| ||||| | |||| Sbjct 785068 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 785009 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || | | ||| | | | ||||| ||||| || Sbjct 785008 ATGCCTTCCTTGTCC-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 784950 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || ||||| |||||||| || || |||||||| Sbjct 784949 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 784902 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||||||| ||||||||| || || || |||| | Sbjct 535904 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 535845 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||| ||||| | ||| Sbjct 535844 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 535785 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | | ||||| |||||| || Sbjct 535784 ATGCCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 535726 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 535725 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 535678 >seq28 Length=4051571 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| || || || |||||| || ||||| ||||||| Sbjct 141578 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 141519 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || ||||||||||||||||| || || || || || ||||| | || Sbjct 141518 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 141459 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| ||| || ||| ||| | | | |||||| |||||| | Sbjct 141458 GATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGA 141400 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || ||||| || ||||| || || || ||| || Sbjct 141399 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTG 141350 >seq16 Length=1730088 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || |||||| || ||||| ||||||| Sbjct 1516931 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 1516872 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||||||||||||||| || || || || || ||||| | || Sbjct 1516871 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 1516812 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 1516811 ATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGAC 1516753 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 ||| | || || || || ||||| || ||||| || || || |||| Sbjct 1516752 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 1516706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303786184400