Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1301 114 8e-21 seq1886 113 3e-20 seq1907 109 4e-19 seq1341 100 2e-16 seq1999 89.7 3e-13 >seq1301 Length=10146 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||| ||| | || || ||||| || ||||| |||| Sbjct 234 TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 175 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | ||||||||| ||||| || | ||||||||||| || Sbjct 174 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGG 115 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | |||| ||| | ||| ||||| Sbjct 114 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGAC 55 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || |||||||| || || || || ||||| ||||| Sbjct 54 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 7 >seq1886 Length=108772 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | || || ||||| |||||||| || | Sbjct 69751 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 69810 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || || | ||||||||| ||||| || | ||||||||||| ||| Sbjct 69811 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 69870 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | |||| || | ||| ||||| Sbjct 69871 ATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACC 69930 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || || || || |||||||||||||| Sbjct 69931 TCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69977 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | || || ||||| || ||||| |||| Sbjct 70207 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 70266 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||||||||| ||||| || | ||||||||||| ||| Sbjct 70267 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 70326 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | |||| || | ||| ||||| Sbjct 70327 ATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACC 70386 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||| || ||||| || || || || ||||||||||||||| Sbjct 70387 TCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCATC 70434 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | || || ||||| |||||||| |||| Sbjct 69979 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 70038 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||||||||| ||||| ||||| || || ||||| ||| Sbjct 70039 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 70098 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | | |||| || | || ||||| Sbjct 70099 ATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 70158 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || || || || |||||||||||||| Sbjct 70159 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 70205 >seq1907 Length=45099 Score = 109 bits (120), Expect = 4e-19 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || || || || ||||||||||||| | Sbjct 41277 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 41218 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || || ||| | || || | ||||||||| || || ||||| || |||||||| | ||| Sbjct 41217 AAGGTG-CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 41159 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || |||||||| ||||| ||| | | | | |||| |||| ||| |||| Sbjct 41158 G-ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGA 41100 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCA 34388 | || | |||||||| ||||| ||||| || || |||||||| |||| Sbjct 41099 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 41052 >seq1341 Length=107648 Score = 100 bits (110), Expect = 2e-16 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || || || ||||||||||||| | || || ||| | || || | ||||||||| || || Sbjct 55443 TCCTTTTGGATGTTGTAGTCGGCCAAGGTG-CGGCCATCCTCGAGCTGCTTGCCGGCAAA 55385 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 ||||| || |||||||| | |||| | || |||||||| ||||| ||| | | Sbjct 55384 GATGAGACGTTGCTGGTCTGGCGGG-ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGT 55326 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | |||| |||| ||| ||||| || | ||||| || ||||| || ||||| || | Sbjct 55325 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 55266 Query 34377 CAAAGATCTGC 34387 ||||||| ||| Sbjct 55265 CAAAGATTTGC 55255 >seq1999 Length=101763 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||| |||| ||| ||| | || || | ||||||||| || || Sbjct 139 TCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 198 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 199 ATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG 258 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| || | |||||| || |||||||| || || || || Sbjct 259 TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACG 318 Query 34379 AAGATCTGCATC 34390 ||||| |||||| Sbjct 319 AAGATTTGCATC 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323054053148480