Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1584 95.1 2e-14 seq2114 91.5 3e-13 >seq1584 Length=565 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||| ||||| || ||||||||||| ||| |||| |||||||||| Sbjct 371 GCCTGGTTAGCTCAGTCGGCAGAGCACTTGACTCTTAATCAAGTTGTCGCGGGTTCGAGC 312 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 311 CCCGCATCGGGC 300 >seq2114 Length=46174 Score = 91.5 bits (100), Expect = 3e-13 Identities = 670/1074 (62%), Gaps = 23/1074 (2%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 33584 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 33643 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| | ||||| | || || ||| ||||||||||||| Sbjct 33644 GTCGTCGGTCGAGACAACTATGGTGTTTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 33703 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 33704 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 33762 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTCA 218074 |||||| ||| || || ||||| || | || | || || ||||| ||| ||| Sbjct 33763 GGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAGCTCA 33821 Query 218075 TGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTTCT 218134 || | ||| | ||| ||| || || || |||||| | || | || |||||| Sbjct 33822 TGATCATGGCCGATCAAGATCACGATGGATCGCACATTAAGGGTCTGATCATCAACTTCC 33881 Query 218135 TCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCTGAAGAAGTTTTCCACTC 218194 || | | |||||| | ||| | || ||| || ||||| ||| | Sbjct 33882 TCGATTACTGGTTCCCTTCGTTGCTCAAGCTAAAGGGCTTCTTGCTCGAGTTTATCACCC 33941 Query 218195 CCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAG------TTTTACAGTCTTCCTG 218248 ||||||| |||| || |||| | ||| ||| |||| || ||||| Sbjct 33942 CCATCGT-----CAAGGCG-ACCAAGGGGAACAAGGAGTTGTCATTTTTCACAATTCCTC 33995 Query 218249 ACTATGAGAGTTGGAAGCAGAACACTGCCGACTGTGCCAAATGGTCTATCAAGTATTTCA 218308 | || ||| |||||| | | || | ||| || |||| |||||||| |||| Sbjct 33996 AGTACGAGCACTGGAAGGAAGAGACCGATGACGGTCGTGGATGGCGCATCAAGTACTTCA 34055 Query 218309 AGGGTCTCGGAACAAGCACATCCGAAGATGCCAAGAAGTACTT---CAAGAACCTCAAG- 218364 |||| | || || || || || || |||||||| ||| | |||| Sbjct 34056 AGGGATTGGGTACGAGTGACGCCAGGGACGCGGTCAAGTACTTTGGCAACATGGACAAGC 34115 Query 218365 -TCGCTCGTGAAGATCTTTGGGTGGACCGAAGACTCTGGCGAGCTCATCGACCGATCTTT 218423 ||||| || | || | ||| | || ||||||| |||||| | || Sbjct 34116 ATCGCT--TGCCGTTCCGCCCTTCGACGCAGGAAGAGCGCGAGCTGATCGACATGGCCTT 34173 Query 218424 CAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGGAAACCA 218483 ||||||| | || | |||||| ||||| | | |||| ||||| | | Sbjct 34174 CAACAAGAAGAAGGCCGACAACCGCAAGGAATGGCTCCGAGGCTTCGTCCCCGGCACGTA 34233 Query 218484 GTTGGACCAGTCGAAGACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCT 218543 | ||||| | || | |||| || || |||||| |||||||| | || || Sbjct 34234 CCTCGACCACAGCATCGCCGAAGTCCCGATCGAGGATTTCATCAACAAGGAGTTGATCCT 34293 Query 218544 TTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATC 218603 |||||| | || | ||| ||||||||| || | ||||| | ||||| Sbjct 34294 CTTCTCGATGGCCGACAACGTGCGCTCTATTCCCTCTGTCATTGATGGGTTTAAGCCGGG 34353 Query 218604 GCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGC 218663 || || ||| || | || | |||||||| || || || || || ||||||| Sbjct 34354 TCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGCAAGTTGACGCAGGAGATCAAGGTCGG 34413 Query 218664 TCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCA 218723 || || ||||| || |||| || | |||||||||||||| |||| |||| Sbjct 34414 ACAATTGGGCGGTTACGTCGCCGAGCACTCGGCGTACCATCACGGTGAAATGAGTTTGCA 34473 Query 218724 GGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCT 218783 || |||| | ||| |||| || | | || || |||||| | ||| | || Sbjct 34474 AGGCACCATCATCGGCCTGGCGCAACAGTTCGTCGGGTCCAACAACCTCAACATTCTCGA 34533 Query 218784 CCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTA 218843 ||| |||||||| |||||| | ||||| ||||| || || ||||| || | || Sbjct 34534 CCCGAACGGTCAATTTGGTACGCGTCTGCAAGGTGGTAAAGACGCGGCTTCGGCTCGTTA 34593 Query 218844 TATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGA 218897 ||||| || || | || || | ||||| || ||| ||| || ||||| Sbjct 34594 CATCTTCACGAACGTATCATCCATCACGCGTAGCGTCTTCCATCCCGCTGATGA 34647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027776774973278