Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2507 170 2e-37 seq2114 125 9e-24 >seq2507 Length=9308 Score = 170 bits (188), Expect = 2e-37 Identities = 562/863 (65%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| || || || | | ||| ||| | | |||||| || || || Sbjct 6312 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 6371 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || |||| || || ||| || ||||| | |||||||| || || || |||| Sbjct 6372 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 6431 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || || |||||||||||| | || | || || || |||| | ||||| || | | Sbjct 6432 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 6491 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | | ||| | || | || ||||| || ||||||| ||||| || | | Sbjct 6492 CAAAGCTTTTGCG-CGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 6550 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG-AGCCCTGGTGCCTTATCTGGACAGA 116728 | ||| ||||| || || | || || | | || || || || | | || |||| Sbjct 6551 CAAGGCGCGGAACTCCTCGCC-ATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGA 6609 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 |||||| ||| | || | |||| || |||| |||||| || || || |||||||||| Sbjct 6610 AGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCG 6669 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | |||||||||| ||| |||| |||| || | || || || || | |||| | Sbjct 6670 CAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 6729 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG-- 116906 | || | || || ||||||||||| || ||||| | ||||| | || | |||| Sbjct 6730 ATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCT 6786 Query 116907 ----ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 ||| | |||| || || | ||| || ||| | || || ||||| || | | Sbjct 6787 TGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAA 6846 Query 116963 TACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTG 117020 | || | || | ||| ||||| || ||| || ||| | | | || | || | ||| Sbjct 6847 TGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTG 6904 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 |||| || ||| ||||| || || ||| ||||| | |||||| | | || || | Sbjct 6905 GATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTC 6964 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 ||| || || || ||||| ||| |||| | | || ||||| ||| ||| | || || Sbjct 6965 GTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGG 7024 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 || || || ||||||||||| || || | |||||| | || | | |||||| Sbjct 7025 GTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACAT 7084 Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||| | || |||||| |||||| | ||||| || |||| | ||| || Sbjct 7085 AAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACG 7144 Query 117261 CATAAACATGTATTG-GGGTGTT 117282 ||| | ||||| ||| ||| ||| Sbjct 7145 CATGAGCATGTGTTGCGGGCGTT 7167 >seq2114 Length=46174 Score = 125 bits (138), Expect = 9e-24 Identities = 292/432 (68%), Gaps = 15/432 (3%) Strand=Plus/Minus Query 176546 CCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTTGAGG 176602 ||||||| ||||||| ||| || || | | || || || ||| | |||||| Sbjct 33963 CCCTTGGTCGCCTTGACGATGGGGGTGATAAACTCGAGCAAGAAGCCCTTTAGCTTGAGC 33904 Query 176603 AGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCG 176662 | || || | |||| | || | |||| ||| |||||||||||||| || |||||| Sbjct 33903 AACGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTAATGTGCGATCCATCG 33844 Query 176663 TTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAA 176722 | ||| ||| | ||| ||||||||| || || || ||| | || || ||| Sbjct 33843 TGATCTTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTGTAA 33784 Query 176723 TCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT- 176781 | || || || || |||||||| |||| ||||| | ||||| ||| || | ||| Sbjct 33783 ACTTTGCCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--TGTC 33728 Query 176782 GAGTTGCGCCA---CTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACAC 176838 ||| | || | | || || || || || |||| || || | |||||| || Sbjct 33727 GAGGAGGGCTTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAAGGGAAAAC 33668 Query 176839 ACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATC 176898 ||| |||| || ||||| || |||| ||||| | || ||||| | ||| |||||||| Sbjct 33667 ACCATAGTTGTCTCGACCGACGACAGCCAGACCCGAGACGGCGAGCGCCTTGGCGGAATC 33608 Query 176899 ACCCTCCGTCACGATGAGCGTACACTTT--CCAGATTGTGCCGTCCCCGCCTTGTTCGCA 176956 || || |||| ||||||||| ||||| || | | | ||| || || ||||||||| Sbjct 33607 TCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTACCAGCGTTGTTCGCA 33550 Query 176957 TCGTCCAACTTG 176968 || || | |||| Sbjct 33549 TCTTCGAGCTTG 33538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613472245427280