Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1886 154 2e-32 seq1907 141 1e-28 seq1301 140 4e-28 seq1999 134 2e-26 seq1341 134 2e-26 >seq1886 Length=108772 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||| ||||||||||| |||| || ||||| | Sbjct 70218 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 70277 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| ||||| ||||| ||||||||||| | || | || ||||| Sbjct 70278 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 70337 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| |||||| ||| | | | |||||| ||| || || || | ||||| Sbjct 70338 GTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGA 70396 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||| ||||| || |||||||| ||||| Sbjct 70397 TCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 70433 Score = 138 bits (152), Expect = 1e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||||| ||||| || | || |||||| ||||| ||||| Sbjct 69744 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTA 69803 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || | || || || | || |||||||||||||| ||||| ||||| ||||||||||| Sbjct 69804 ATCCGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 69863 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | || ||||||||| ||||| |||||| ||| | | | |||||| || Sbjct 69864 TGGGGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACG 69922 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || | |||||| || |||||||| ||||| || |||||||| ||||| Sbjct 69923 ACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69977 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||| ||||| ||||| |||| || ||||| | Sbjct 69990 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCC 70049 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| ||||| || | || || ||||| | || | || |||||| Sbjct 70050 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTT 70109 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||| |||||| ||| | | | |||||| || || || || | ||||| Sbjct 70110 ATCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 70168 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||||||||| || |||||||| ||||| Sbjct 70169 TCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 70205 >seq1907 Length=45099 Score = 141 bits (156), Expect = 1e-28 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| | ||||| | || ||||||||||||||||| || Sbjct 41242 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 41183 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | ||| | || |||||||| |||||| |||||| ||| Sbjct 41182 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 41124 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | |||||||| |||||||| || || || | Sbjct 41123 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 41064 Query 46581 CAAAGATTTGCA 46592 |||||||||||| Sbjct 41063 CAAAGATTTGCA 41052 >seq1301 Length=10146 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| |||| || |||||| ||||||||||| |||| Sbjct 233 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 174 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || |||||||||||||| ||||| ||||| ||||||||||| | || Sbjct 173 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGA 114 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| ||||| ||||| | | | ||| || ||| || || Sbjct 113 ATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACC 54 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||| || ||||| ||||| || || || ||||||||||| Sbjct 53 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 7 >seq1999 Length=101763 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| |||| || ||||| | || |||||||||||||| || || Sbjct 138 CTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 197 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || ||||||||| |||||| ||||| ||| Sbjct 198 GATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 256 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||| || ||||| ||||| || || | Sbjct 257 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGA 316 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 317 CGAAGATTTGCAT 329 >seq1341 Length=107648 Score = 134 bits (148), Expect = 2e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| | ||||| | || ||||||||||||||||| || Sbjct 55444 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 55385 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | ||| | || |||||||| |||||| |||||| ||| Sbjct 55384 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 55326 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | ||||| || |||||||| || || || | Sbjct 55325 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 55266 Query 46581 CAAAGATTTGC 46591 ||||||||||| Sbjct 55265 CAAAGATTTGC 55255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565206195542160