Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2507 217 3e-51 seq2299 95.1 2e-14 >seq2507 Length=9308 Score = 217 bits (240), Expect = 3e-51 Identities = 784/1214 (65%), Gaps = 37/1214 (3%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || ||||||||||||||||| ||||| ||||||||| | |||||||| ||| | Sbjct 6048 GCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAATCG 6107 Query 221483 AAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGG 221540 || ||||| ||| || |||| | ||||||| || || || |||||||| ||||||| Sbjct 6108 AACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGATGG 6165 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | | ||| | |||||| ||| || |||||||| ||||||||||||| | Sbjct 6166 GGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGA 6225 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 ||| | ||| | || || ||| || || |||||| || |||| || || Sbjct 6226 TGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTC------TTAAAGT 6279 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 | || ||||| | | || | | || | || ||| | || ||||| || Sbjct 6280 CGTACACGCCGTC--CTTGATGAAGCTCGGC-AACGCG--------ATCG-AGGCCAAGT 6327 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGC 221780 | || ||||| ||||||| | |||| |||||||| || || ||||| Sbjct 6328 TGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACG 6387 Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 ||||||| || || || | || || || || || || || ||||| |||||||||| Sbjct 6388 ACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCA 6447 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC 221900 |||| || |||||| || | ||| || | |||||| || ||| || | | ||| Sbjct 6448 TAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGG 6507 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC---AA 221957 | ||| ||||| | ||||| |||||| || | | || || | | | Sbjct 6508 GGATCGTTTTCTTGGCGCGGCCCTC---CTTTTCGTA---TTTCTCGAACAAGGCGCGGA 6561 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || || | |||| ||||| || |||||| || | ||| ||| | Sbjct 6562 ACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAAT 6621 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | | | | ||| | || |||||| || || || ||||| ||||| ||||||| Sbjct 6622 CGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGAT 6681 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | | || |||||| ||||| ||| || | || |||| || || || | || Sbjct 6682 CACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGT 6741 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 | |||||||||||||| || |||| || | || ||||| |||||||||||||| || | Sbjct 6742 CGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGT 6801 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 | || | | | |||| ||| || || | || || | ||||| || | Sbjct 6802 CGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGC 6861 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATA 222316 |||| ||||| ||||| | ||| || | | ||| ||| | || |||||| Sbjct 6862 CGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCGATA 6920 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 ||||||||| || ||||| | ||||| |||| || ||||| ||||| || || Sbjct 6921 CCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCAATC 6980 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 || || ||||| | | | ||| ||||| ||||| | ||| | | | | | |||| Sbjct 6981 GAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCG 7040 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || || ||||| || |||||| |||||||||| | ||||| || | ||||| || Sbjct 7041 TTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGC 7100 Query 222497 ACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGG 222556 | ||| | | |||| || ||||| || | |||| | |||| ||||| || Sbjct 7101 AAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGC 7160 Query 222557 GGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 || | || | |||| | | | || |||| ||| || ||| || || |||| Sbjct 7161 GGGCGTTCGGC--GACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTTGA 7218 Query 222615 ACCCAAAGTAGTTG 222628 | |||||||||||| Sbjct 7219 AGCCAAAGTAGTTG 7232 >seq2299 Length=200938 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 25488 GTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACAT 25547 ||||||||||||| | || ||||||||||||||||| || ||| |||||||||| Sbjct 140334 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 140275 Query 25548 GGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTG 25602 | ||| |||| || |||| | || ||||||| | || || | |||| | Sbjct 140274 GCACGACTGGGACAACAAGCTCAAGCC--CGACGAGCGCTACTTCATCTCGCACGTCCTC 140217 Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || || || || ||||| || || || || |||||||| || |||| ||||| | | Sbjct 140216 GCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGT 140157 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || || |||| | ||||| || ||||||||||| || || Sbjct 140156 GAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAAT 140113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928791879067520