Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2507 192 9e-43 seq2299 116 6e-20 seq2395 113 7e-19 seq2320 111 2e-18 seq1960 105 1e-16 seq1576 87.8 3e-11 seq3983 86.0 1e-10 >seq2507 Length=9308 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 6798 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 6857 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 6858 TAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 6917 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||| ||||| || Sbjct 6918 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 6977 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 6978 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 7037 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 7038 GCGTTGAAGAGCGTCGGCG 7056 Score = 136 bits (150), Expect = 6e-26 Identities = 296/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||||||| | |||| | | ||||| || ||| Sbjct 6348 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 6407 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| ||||||| |||| ||||| | || || || ||| Sbjct 6408 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 6467 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || | || || |||||| | ||||||| | || || | |||||| Sbjct 6468 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 6527 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | | |||| || | |||| | | ||||| ||| Sbjct 6528 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGG 6587 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | ||| |||||| | | | | || || ||| Sbjct 6588 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 6647 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || ||| |||| || | | |||||||| || || || |||||||||||| Sbjct 6648 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 6707 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || |||||||||||||||||| |||||| Sbjct 6708 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 6767 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 6768 GCGAAGGCTCCGGGACGCTTGTTGCCACC 6796 Score = 102 bits (112), Expect = 1e-15 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | ||| ||||||| ||||||||||| Sbjct 5198 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 5257 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCG 2069368 ||||| || || | ||| ||||| |||||||||||||| || | | | || | Sbjct 5258 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGC-CATCGTTGG 5316 Query 2069369 GGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCG 2069428 | || || ||| || ||| ||||| || |||||| | ||| | |||||||| | Sbjct 5317 GCTCGACA-AGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGG 5375 Query 2069429 CCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || |||||| | | | ||| || | |||||| ||||||||| | | |||||||||| Sbjct 5376 ACAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGA 5434 Query 2069488 T 2069488 | Sbjct 5435 T 5435 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| |||||| ||| | Sbjct 6047 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTACGCGCCTCGGGCGAAT 6105 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 6106 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 6163 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | |||||| || || |||| ||||| |||||| Sbjct 6164 GGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 6223 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 6224 GATGCGGTTCAAGTTG 6239 >seq2299 Length=200938 Score = 116 bits (128), Expect = 6e-20 Identities = 145/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 140137 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 140196 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 140197 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 140256 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | |||| | ||||| | ||| |||||||||||||| || Sbjct 140257 TTGTTGTCCCAGTCGTGCATGTCCTTGGACAGGTCCATCTCTTCGGCGGTCCAAAAAGAT 140316 Query 796327 GCCTCGGCCTTTTTGTAC 796344 ||||| ||||| |||||| Sbjct 140317 GCCTCAGCCTTCTTGTAC 140334 >seq2395 Length=28515 Score = 113 bits (124), Expect = 7e-19 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 28074 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 28133 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA---TCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | || ||| ||| | |||| || ||| || || Sbjct 28134 AGGTCTGGATCTCGCGCGACGAGATAGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGC 28190 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 || ||| || |||||| || | || |||||||| |||||||| | |||| ||||| Sbjct 28191 ACGCTTCGATGGTGATGCGCTCAAAGATATCGTTGACGAACGAGTTGAGGATCAGCATCG 28250 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || ||||| | ||||||| Sbjct 28251 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 28297 >seq2320 Length=215816 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCAG 796198 ||| ||||| ||||||| | || ||||| ||| | ||| | | ||| ||||||| Sbjct 187274 AAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGA-GAACCTCTCAACCAAGTTCTCAT 187216 Query 796199 CCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGT 796258 ||||| || || |||||||| |||||||| ||||| |||||||| || |||| Sbjct 187215 TCACGACCCCATCCGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGT 187156 Query 796259 CGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 187155 CGTTGTTGAGCTTGTGGTGCCAGTCGTTGAGGTCGCTGCCGAGGTCGATCTCTTCGGCGG 187096 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 187095 ACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 187055 >seq1960 Length=175358 Score = 105 bits (116), Expect = 1e-16 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 1485487 TTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG 1485546 ||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 37302 TTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAA 37361 Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 |||||||||||||| | |||||| ||| | |||| | |||||| || | Sbjct 37362 GTCTGGATCTCGCGCGACGTGATCGTCGCCTTGTGGTTGT-ATTGCGCG--AGCTTGGAC 37418 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||| | |||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 37419 GCCTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCC 37478 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || || | | ||| ||| Sbjct 37479 TTGTTCGAGATACCCGTGTCGGGGTGAACTTGTCTCAACACTTTG 37523 >seq1576 Length=40672 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| || ||||||| ||||||| ||| || || ||| | | || Sbjct 88 ACTTGGTGACGGCCTTGGTTCCTTCTGAGATGGCGTGCTTGGACAACTCTCCGGGGAGGA 29 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||||| || | |||||||||||| || Sbjct 28 TGAGGCGGACCGAGGTCTGGATCTCTCG 1 >seq3983 Length=52742 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 48189 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGGGT 48130 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| || Sbjct 48129 CGCCACAAGCTCGTCATCCTCGATGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAGCG 48070 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 ||||| ||| ||||||| | | ||| ||| || || || || | || |||||| | Sbjct 48069 CTCCGCAGGACGATGGAAATATTCTCCAGCACCACTCGCTTCGCCTTTGCGTGCAACCAG 48010 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | || Sbjct 48009 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 47950 Query 2019387 ACCGACGCCCAG 2019398 ||||| ||| || Sbjct 47949 ACCGATGCCGAG 47938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915761544750962