Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1301 185 1e-41 seq1999 167 3e-36 seq1886 165 9e-36 seq1341 154 2e-32 seq1907 150 2e-31 seq1547 114 1e-20 seq2507 109 6e-19 seq2148 89.7 6e-13 >seq1301 Length=10146 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 7 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 66 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 67 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 126 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||||| || || || || || || ||| Sbjct 127 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 186 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | || | ||||| || || ||||| Sbjct 187 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGACA 236 >seq1999 Length=101763 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 329 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 270 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 269 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 210 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||||| || || || || || || ||| Sbjct 209 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 150 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 149 ATCCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTCCGAGGTGG 103 >seq1886 Length=108772 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 69977 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69918 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||||||||| || ||||| ||||||||| Sbjct 69917 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 69858 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| ||||| || || || || || Sbjct 69857 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAAC 69798 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || || || || | || ||||||| || ||||| ||| Sbjct 69797 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGTCAA 69747 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 70433 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 70374 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| || ||||| ||||||||| Sbjct 70373 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 70314 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||||| || || || || || || ||| Sbjct 70313 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 70254 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 70253 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGG 70207 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || || || ||||| ||||| Sbjct 70205 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70146 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||| |||||||| ||||| |||||||| Sbjct 70145 GACACGATCGACAACGTCAAGACCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 70086 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| |||||||||| || || || || || || || Sbjct 70085 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 70026 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 70025 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGG 69979 >seq1341 Length=107648 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 |||||||||||||||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 55255 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55314 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || | || | ||| | || || || |||||||| || || || ||||||||||| Sbjct 55315 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 55374 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 ||||| || ||||| || ||||| |||||||||| || ||| | || ||||| || | Sbjct 55375 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 55434 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||| || || || || | ||| | || || || ||||| Sbjct 55435 CCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTCCGAGGTGG 55479 >seq1907 Length=45099 Score = 150 bits (166), Expect = 2e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| || || |||||||| || || || ||||| ||||| | Sbjct 41052 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 41111 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | || | || | ||| | || || || |||||||| || || || |||||||||| Sbjct 41112 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 41171 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | ||||| || ||||| || ||||| |||||||||| || ||| | || ||||| || Sbjct 41172 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 41231 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || | ||| | || || || ||||| Sbjct 41232 TCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGG 41277 >seq1547 Length=61654 Score = 114 bits (126), Expect = 1e-20 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| |||||||| ||||| || || || ||||| || || || || || || Sbjct 26210 GAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCCGAGACGACGCCCTTCTACCCTCGT 26151 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || ||| | ||| ||| ||| |||||||| |||||||||||| ||||| Sbjct 26150 TCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTGGATCGTCAAGAACTACCGCGAGGCG 26091 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCT 24923 | || || || || |||||||| || |||||||||| ||||| |||||| || | Sbjct 26090 TACGGCATGTACGCGTGCAACGGTATCTTGTTCAACCACGAGTCCCCGCGTCGTGGTCGC 26031 Query 24924 GAATTTGTTACACGAAAGATTACTCTTGGTATTGACCA---TTGGATCAAGACA--AGGG 24978 ||||| || | |||||| | | | | | | | | | | || | || ||| Sbjct 26030 ACCTTTGTCACGAGGAAGATTTCCCGAGCTGTCGCCGAGATCTCGCTC-GGTCAACAGGA 25972 Query 24979 C-ACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTAC 25037 | ||| | | || || || | || ||||| ||||||||||| || || ||||||||| Sbjct 25971 CTGCCTCT--ACCTCGGCAATATGGAGGCCAAGCGTGATTGGGGACACGCCGCCGACTAC 25914 Query 25038 GTCGACGCCATGTGGCGCATG 25058 ||||| | |||||| | ||| Sbjct 25913 GTCGAGGGTATGTGGAGGATG 25893 >seq2507 Length=9308 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 |||||||| |||| ||||||||||||||||| || || ||||||||||||| | |||| Sbjct 5231 GCCCGCGTGCGCAAGTAGTACATGCCCGTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGC 5290 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || ||| || || | |||||| || || || ||||| Sbjct 5291 ATCGACGTGAGCTGCGCCATCGTTGGGCTCGACAAGTGGATGTTAAGCGATTGCGACTGG 5350 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 ||||| || || || || || | || || ||||| | |||||| | | ||||| Sbjct 5351 TCAATGAAGGCACCTCGGTCGGCGGACAAGTCGATAATAGTCTTTTGCGAGAGCTCCCAG 5410 Query 80212 ACTGT 80216 || || Sbjct 5411 ACGGT 5415 >seq2148 Length=41671 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| |||||||| ||||| || ||||| ||||| || || || || || || Sbjct 5209 GAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTCCGAGACGACCCCCTTCTACCCTCGT 5268 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || ||| | ||| ||| ||| | |||||| |||||||||||| ||| | Sbjct 5269 TCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAAGAACTACCGCGAGTCG 5328 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTC 24907 | | || || || |||||||| || || |||||||| ||||| Sbjct 5329 TACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAGTC 5372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570277906564960