Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3051 185 9e-42 seq2638 145 8e-30 seq2027 145 8e-30 seq2237 140 3e-28 seq1880 105 7e-18 >seq3051 Length=61137 Score = 185 bits (204), Expect = 9e-42 Identities = 175/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||||||||| || || ||||||| ||| ||| ||||| |||||||||||| Sbjct 31854 GTACAAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTGTCCAAGGACAT 31913 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 31914 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 31973 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||| ||||||||||| |||||||||| ||| || || Sbjct 31974 CTTTTTCGCCGCCTCCGACGGCATTGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 32033 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| || || ||| Sbjct 32034 GGTCCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTCCAAATC 32076 >seq2638 Length=73519 Score = 145 bits (160), Expect = 8e-30 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| ||||| || || ||||||||||| ||||||||| |||| ||||| | ||| Sbjct 4067 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4008 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| || ||||||||| | |||||| Sbjct 4007 ACACGATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 3949 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| ||||| || || | ||||| ||| || |||||| Sbjct 3948 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 3889 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| | ||||| || | ||| | ||| || | || || Sbjct 3888 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGG 3842 >seq2027 Length=89189 Score = 145 bits (160), Expect = 8e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| || ||||| |||| || || || | Sbjct 8865 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 8924 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| |||||||| ||| | ||||| Sbjct 8925 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 8983 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||||||||| ||||| || || | || || ||| ||||||||| Sbjct 8984 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAA 9043 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | |||||||| Sbjct 9044 CATCCAGAAGGAGTCGACGCTGCA 9067 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || ||||| | || || || || | Sbjct 8637 ATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCTCG 8696 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || |||||||| ||| | ||||| Sbjct 8697 GACACGATCGACAACG-TAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 8755 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||||||||| ||||| || || | || || ||| ||| ||||| Sbjct 8756 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGATTACAA 8815 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | |||||||| | ||| | ||| Sbjct 8816 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGC 8852 >seq2237 Length=56155 Score = 140 bits (154), Expect = 3e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 || |||| | |||||| ||||| || || || |||||||| || |||||| |||| ||| Sbjct 39759 CTGCGAATCAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTC 39700 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 || | |||||| | | |||| ||||| || || | ||||| || |||||||| Sbjct 39699 GAGTCGTCCGACACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCC 39641 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 | | ||||||||||| ||||||| ||| ||||| ||||| || || | |||||| | Sbjct 39640 CCCAGACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGC 39581 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||||| |||||| | || || || | ||| | ||| Sbjct 39580 CGACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGC 39535 >seq1880 Length=81946 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| ||||||||||| ||||| ||||||||||||||||| |||| |||| Sbjct 66012 TTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCCGGCCTCTGTTTCTCCAAC 65953 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 65952 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 65893 Query 117206 TTG 117208 ||| Sbjct 65892 TTG 65890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195210106000