Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3232 150 4e-31 seq2122 89.7 1e-12 >seq3232 Length=25038 Score = 150 bits (166), Expect = 4e-31 Identities = 465/715 (65%), Gaps = 11/715 (2%) Strand=Plus/Plus Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817 ||||| || |||||| ||| ||| || |||| || ||||| | ||||| | Sbjct 2899 GTCATCATGGCCAACGCCGACCGCCTCAACAGCGCCGTTATCTACGACCGCGATTTCGGC 2958 Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| ||||| ||| || || | || || || |||||| Sbjct 2959 TACAACTACTTTGGCTTCAAGACGCTCGAGCGCTCCTACTTGCTTCGCATCGACGGCAAG 3018 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| ||||| || |||||| | ||||| || || ||||| || ||| | ||| Sbjct 3019 GTCGCCGAACGCCCGCAACACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGAC 3078 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||| |||| | || |||||| | ||| || |||| | || || ||| | Sbjct 3079 ATCGAGCGCGTCTTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTTACCCACGCCTCG 3138 Query 248998 CCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 |||||||||||||||||||| || | || || ||||| ||||| || || | | Sbjct 3139 CCGACGCTCTTCAACGCCGGAACGCCTC-ACCCGCAGCTTTCGTCGTGTTTCCTGGTCAC 3197 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGAT 249113 |||| | |||||||| |||| ||||| || |||||||| | ||||| ||| || Sbjct 3198 CATGAAGGACGACTCGATCGAAGGCATCTACGACACGCTCA---AGACGTGCGCGCTCAT 3254 Query 249114 TTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTA 249173 || || ||| || || |||||| | | || ||||||||| |||| || || || Sbjct 3255 CTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTA 3314 Query 249174 CATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 |||| || || || || | | || ||||| ||| | || || || | Sbjct 3315 CATCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAA 3374 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTT 249290 |||||| | | | || |||| | || | || || | ||||| || || | Sbjct 3375 CACCGCGCGCTACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCT 3434 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || |||||||| || | || |||||||||||| | |||||| ||||||| || Sbjct 3435 CGAGCCATGGCACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGA 3494 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | || ||||| ||||||| | || ||| | |||| |||| ||| || Sbjct 3495 GGAGGTCCGCGCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCG 3554 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTC 249465 ||| |||||| | |||| ||| | || | | || | || ||||| | |||| Sbjct 3555 TGTCGAGGCCGCCAGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTC 3609 >seq2122 Length=122159 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 115388 TCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGT 115447 |||| |||| || || || |||| ||||||||||| |||||||||||| || | || Sbjct 96896 TCGAGTACCTCAAGATGGCGCATCGACTCTGAATCGGCTCGATGATTTTGTTGCTCTGGT 96837 Query 115448 TGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCT 115507 |||| | | | ||| || || ||| | ||| | | ||||| ||| || ||||| | Sbjct 96836 TGCACGCAAAGGCGAAGCGAGTGGTGTTGGAGAAGATTTCCATCGTCCTGCGGAGCGCTT 96777 Query 115508 GGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 | || || || ||||||||||| || |||||||| | ||| | ||| Sbjct 96776 GCTGGGCTCCCGGGGTCATCGAGTCGGCTTCGTCGAGGATGACGAGCTT 96728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073715152820800