Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3051 113 7e-20 seq3232 87.8 3e-12 >seq3051 Length=61137 Score = 113 bits (124), Expect = 7e-20 Identities = 175/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| ||||| |||| ||||||||||| | ||||||| | || || Sbjct 31843 ATCTGGGCACAGTACAAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTG 31902 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 31903 TCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 31961 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || || |||||||| || || | || Sbjct 31962 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCATTGTCAACGAGAACTTGGTCGAGCG 32021 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| ||||| ||||| ||||||||||| Sbjct 32022 ATTCTCTGGTGAG--GTCCAGTCCGCCGAGG-CTCGATGCTTCTACGGTTTCCAAATCAT 32078 Query 125255 GAT 125257 ||| Sbjct 32079 GAT 32081 >seq3232 Length=25038 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | |||||| || | ||||| || Sbjct 4780 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTCGGCCGATCGA 4839 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAG- 98155 || | || ||| |||||| |||||| |||| | || ||| ||||||| | | | Sbjct 4840 GGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCAC-TTGTCGAGCCCGACGATGGC 4898 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | | || ||||| ||||| |||| ||||| || || ||||||||||||||||| Sbjct 4899 ACAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGGCATGTACTA 4958 Score = 84.2 bits (92), Expect = 3e-11 Identities = 333/516 (65%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | || || |||||| | | ||||| | | || Sbjct 3325 ACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGC 3384 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || || || | || ||||| | || || ||| Sbjct 3385 TACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGG 3444 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || | || | ||||| ||| ||| || |||| || Sbjct 3445 CACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGC 3504 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || | ||| |||||| | || ||| |||| ||| |||| ||| | | | Sbjct 3505 GCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCC 3564 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | || | ||| ||| | ||||||| | ||||| || ||| || ||| Sbjct 3565 GCCAGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGC 3624 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGT 97165 |||||||| ||| || | | ||||| | |||||||| | | |||||| | Sbjct 3625 GAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA-T 3683 Query 97166 CGATGCACGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | | | || ||| | || | || ||| || ||||| || || || | |||| Sbjct 3684 CCCCGCGCAAAAGCTTTGGTACGCGATTCTTGA-AGCCCAGGTCGAAACCGGCAACCCGT 3742 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATC 97283 ||| ||||||||||| ||| || | || | | |||||| || | ||||| ||| Sbjct 3743 TCATGCTCTACAAGGACGCCG-CAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATC 3801 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| || || ||||||| || || | |||||| Sbjct 3802 AAGTCGTCGAACTTGTGCACCGAGATCATCGAGTAC 3837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741024694431000