Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3278 118 2e-21 seq1695 91.5 3e-13 seq1334 91.5 3e-13 seq1681 89.7 1e-12 >seq3278 Length=70221 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| ||||| ||||| || ||||| ||||| || |||| |||||| Sbjct 66231 GGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACCCTGATCAAGCTCTTGACGGGCGAG 66172 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || || |||||| |||||| |||| | || |||||||| Sbjct 66171 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCACCCCAACTTGCGTGTCGCGTACGTCGCC 66112 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| ||| Sbjct 66111 CAACACGCGTTCCACCACATCGAGGAGCACCTTGAGAAGACGGCGATGCAGTACATCCAG 66052 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 66051 TGGCGTTA 66044 >seq1695 Length=206671 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||| Sbjct 315 AGCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAG 374 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 375 CCCCGCATTGGGC 387 >seq1334 Length=3689 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 2188 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 2247 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 2248 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 2307 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 2308 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 2367 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 2368 GGCTTCCT 2375 >seq1681 Length=33090 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 32946 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 32887 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 32886 CCCGCATTGGGC 32875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027787744882725