Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2102 129 6e-25 seq2027 111 2e-19 >seq2102 Length=107014 Score = 129 bits (142), Expect = 6e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | | ||||| |||||| || | || |||||| ||||| ||||| Sbjct 67710 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTA 67769 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || || || || | || || |||||||| || ||||| || | |||||||||||| Sbjct 67770 ATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 67829 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCG 42153 | || | || ||||||| | ||| | || || |||| | | | |||||| | Sbjct 67830 TGGGGGAATGCCTTCCTTGT-CTTGAATCTTGGTCTTGACATTGTCGATCGTGTCCGAGG 67888 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || |||| ||||| || |||||||| |||||||| || ||||||||||| Sbjct 67889 ACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 67943 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| ||||| |||||||| || || || || | Sbjct 67956 ACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGCGAGCGTGCGGCC 68015 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| || || ||||| | || | | |||||| Sbjct 68016 ATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTT 68075 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| | | | |||||| || || || |||| ||||| Sbjct 68076 GTCTTGGATCTTGGTCTTGACATTGTCAATCGTGTCCGAGGACTCGACCTCGAGGGTGAT 68135 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| |||||||| || ||||||||||| Sbjct 68136 CGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 68171 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| ||||| |||||||| || || || || | Sbjct 68184 ACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGCGAGCGTGCGGCC 68243 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| || || ||||| | || | | |||||| Sbjct 68244 ATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTT 68303 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| | | | |||||| || || || |||| ||||| Sbjct 68304 GTCTTGGATCTTGGTCTTGACATTGTCAATCGTGTCCGAGGACTCGACCTCGAGGGTGAT 68363 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || | ||||| || ||||||||||| Sbjct 68364 GGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 68399 >seq2027 Length=89189 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||| |||| || |||||| || || ||||| || || Sbjct 9091 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9032 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || ||||| ||||| || || ||||| | || Sbjct 9031 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 8972 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| | || | |||| ||| | | | |||||| || || | Sbjct 8971 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCAA 8914 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || | ||||| || ||||||||||| Sbjct 8913 CCTCGAGCGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 8865 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | || | |||||| |||| || |||||| || || |||||||| || Sbjct 8864 ACCACCTCGGAGGCGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 8805 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| ||||| || || ||||| | || Sbjct 8804 GAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGG 8745 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | || |||||| ||| ||| | || | | ||| | | | |||||| || || | Sbjct 8744 AATGCCCTCCTTATCC-TGAATCTTAGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAA 8686 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||| || ||||| |||| ||||| |||||||||||||| Sbjct 8685 CCTCAAGCGTGATCGTCTTGCCGGTTAAGGTCTTGACAAAGATTTGCAT 8637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543187506654000