Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2237 104 2e-17 seq2027 93.3 4e-14 seq2638 86.0 6e-12 seq2102 84.2 2e-11 >seq2237 Length=56155 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | || || || | | | ||||||||||| |||||||||||| | Sbjct 39524 CCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 39583 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| |||| ||||| || ||||| || || Sbjct 39584 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 39643 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| | Sbjct 39644 ATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 39701 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | ||| || || || ||||| || || || || ||| || Sbjct 39702 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGCCTG 39751 >seq2027 Length=89189 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||| | || || || | | |||||||| || |||||||||||| Sbjct 9091 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9032 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || || | |||| ||||| |||||||| || || Sbjct 9031 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 8972 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 8971 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCAA 8914 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || |||| || || || || || ||||| Sbjct 8913 CCTCGAGCGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 8865 >seq2638 Length=73519 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || || |||||||| || || |||| | Sbjct 3875 GACTCCTTTTGGATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 3934 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| || ||||| || || || ||||| ||||| || | || || || | Sbjct 3935 AAGATGAGACGTTGCTGGTCGGGGGGGATGCCTTCCTTGTC-CTGGATCTTGGTCTTGAC 3993 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| |||||| ||||||| || | || || || || || || | Sbjct 3994 GTTG-TCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCT 4052 Query 138599 TTACAAAAATCTGCA 138613 | || || || |||| Sbjct 4053 TGACGAAGATTTGCA 4067 >seq2102 Length=107014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| || | || || |||||||| || || || | | Sbjct 67978 GACTCCTTCTGAATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCA 68037 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| ||||| |||||||| || || ||||| || ||||| ||| || | || | Sbjct 68038 AAGATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACA 68097 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||||| ||||||| || | ||| || || || || || || Sbjct 68098 TTG-TCAATCGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTT 68156 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 68157 GACGAAGATTTGCAT 68171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239292782000