Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3051 176 5e-39 seq2638 147 2e-30 seq2027 147 2e-30 seq2237 136 4e-27 seq2102 136 4e-27 seq1880 91.5 1e-13 >seq3051 Length=61137 Score = 176 bits (194), Expect = 5e-39 Identities = 173/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| || ||||| ||||| || |||||| | ||| || || || ||| ||||| Sbjct 32076 GATTTGGAAACCGTAGAAGCATCGAGCCTCGGCGGACTGGACCTCACCAGAGAATCGCTC 32017 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||| ||||||||| ||||||||||||||| || |||||| ||| Sbjct 32016 GACCAAGTTCTCGTTGACAATGCCGTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGAT 31957 Query 133338 GAAATGGCGCTCGTTG---TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| | |||||||| | | | | | ||||||||| || |||||||||||| ||| Sbjct 31956 GAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTC 31897 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 || ||| ||| |||||||||| || |||||||| || |||||| Sbjct 31896 CATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 31854 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| | ||||||||||||| || | ||||||||| | |||||||| |||||| Sbjct 32686 GAACAAGAGGCAAGCAAAGTCGGTGTGAAGGCCCTCGTCACGCGAAATGAGCTCGTTGGA 32627 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGG 132991 ||| ||||| |||||||| | ||| || || |||||||| || |||| Sbjct 32626 GAAGGTCAATCCGGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGG 32580 >seq2638 Length=73519 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| ||||| || || ||||||||||| ||||||||| |||| |||||| | ||| Sbjct 4067 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4008 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| || | | | | |||| || |||| ||||| || || || ||| ||||||| Sbjct 4007 ACA-CGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 3949 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || ||||| ||||| || || | ||||| ||| || |||||| Sbjct 3948 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 3889 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| ||||||| || |||||||| || Sbjct 3888 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCG 3854 >seq2027 Length=89189 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| || ||||| |||| || ||| || | Sbjct 8865 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 8924 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| |||||| | ||||| Sbjct 8925 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 8983 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||||||||| ||||| || || | || || ||| ||||||||| Sbjct 8984 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAA 9043 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| |||||||| ||| | ||||||| Sbjct 9044 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGG 9091 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || ||||| | || || ||| || | Sbjct 8637 ATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCTCG 8696 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || ||||| |||||| | ||||| Sbjct 8697 GACACGATCGACAACG-TAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 8755 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||||||||| ||||| || || | || || ||| ||| ||||| Sbjct 8756 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGATTACAA 8815 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||||||||| |||||||| || Sbjct 8816 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCG 8851 >seq2237 Length=56155 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 |||||| ||||| || || || |||||||| || |||||| |||| |||||| | |||| Sbjct 39748 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 39689 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || || | | | | |||| || |||| ||||| || || || ||| | ||||| | Sbjct 39688 CA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 39630 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 | || ||||| | ||| ||||| ||||| || || | |||||| | ||||||||||| Sbjct 39629 AACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 39570 Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| |||| || || |||||||| || Sbjct 39569 TCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCG 39536 >seq2102 Length=107014 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| |||||||| || |||||| |||| |||||| || | Sbjct 67943 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 67884 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | |||| || || | ||||| || || |||||| | ||||| Sbjct 67883 GACA-CGATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 67825 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || || | ||||| ||| || ||||| Sbjct 67824 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 67765 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| ||||||| || |||||||||||| Sbjct 67764 CATTCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGT 67728 >seq1880 Length=81946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| |||||| | | || || ||| ||| | || ||||| | ||| ||||| Sbjct 65890 CAAATGACTGAACAAGAGGACGGCGAATTCGGTATGAAGACCTTCGTCGCGGGATATGAG 65949 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| |||| | ||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 65950 CTCGTTGGAGAAACAGAGGCCGGGCATGAGGCCTCGTTTTTTGAGCCAAAAGATGGAGGC 66009 Query 132996 GAA 132998 ||| Sbjct 66010 GAA 66012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149510704000