Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2960 154 2e-32 seq3232 143 3e-29 seq2953 116 5e-21 seq1695 116 5e-21 seq1880 82.4 9e-11 >seq2960 Length=54936 Score = 154 bits (170), Expect = 2e-32 Identities = 272/394 (69%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| | || |||||||| | || ||| ||| || ||||| || | || ||| Sbjct 33886 CCGCTTTTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAAACCCCTCAATC 33945 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||||||||||||||| || ||| ||||||||| | ||| | || || Sbjct 33946 CGAGACGACACCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 34005 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||| | ||||| Sbjct 34006 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCTTGTTCAA 34065 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 13830 ||| || || ||| | || ||| ||| |||||| || | ||||||| || | | || Sbjct 34066 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 34124 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| | ||| || |||| | | || | | || ||||| | || || | | Sbjct 34125 CCGAGATCTCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTG 34184 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 13950 ||||||| |||||| ||||| || || | ||||||| | ||||| || ||||| Sbjct 34185 ATTGGGGACACGCGCGCGACTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACCC 34244 Query 13951 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 13984 ||||||| | ||| | || |||||||||||||| Sbjct 34245 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 34278 >seq3232 Length=25038 Score = 143 bits (158), Expect = 3e-29 Identities = 520/806 (65%), Gaps = 17/806 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| ||||||| ||||| |||| ||||| || | || || || || Sbjct 3030 CCCGCAACACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGT 3089 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || || | |||||| | || || |||| Sbjct 3090 CTTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTT-ACCCACGCCTCGCCGACGCTCT 3148 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 3149 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACCATGAAGGACG 3208 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || ||| | ||||| |||| ||| |||| || || | ||||| ||| || | Sbjct 3209 ACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCG 3268 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 |||||||||| || |||||| | || | || | | ||| || || || | Sbjct 3269 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGA 3328 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || | || | || || | || ||||| || || | ||| ||| |||||||| | Sbjct 3329 ACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACG 3388 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||||| ||| ||||| | ||| | |||| |||| || |||||||||| Sbjct 3389 TCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCATGGC 3445 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCG 112081 |||| || || | |||||||| || | || ||||| || | ||||||| |||| Sbjct 3446 ACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGCG 3505 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 | || |||||||||| || ||||||||||| ||||| || ||| || | || |||| Sbjct 3506 CT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGC 3563 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || | ||| | ||||| || || | | || ||||| ||| ||| | | || Sbjct 3564 CGCCAGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGG 3623 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 || ||||| ||| | | | || ||||| | || | || || | |||| | Sbjct 3624 CGAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGAT 3683 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 || || || | | | ||| | || ||||| | | || ||| || || | || | Sbjct 3684 CCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACCGGCAACCCGT 3742 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| |||||| ||| |||| || |||||||| | || ||||| Sbjct 3743 TCATGCTCTACAAGGACGCCGCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCA 3802 Query 112381 AGAGTTCCAACCTCTGTACAGAAATC 112406 || || ||| | || || || ||| Sbjct 3803 AGTCGTCGAACTTGTGCACCGAGATC 3828 >seq2953 Length=106328 Score = 116 bits (128), Expect = 5e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || || Sbjct 86254 CCGCTTCTACCAAGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 86313 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| |||||| |||||||||| | ||| | || || Sbjct 86314 CGAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGCTGTACGCCTTCTG 86373 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| ||||| ||| || ||| ||| ||||||||||| Sbjct 86374 GATCGTCAAGAACTACCGCGAGTCGTACGGCATGTACGCGTGCAACGGTATCCTCTTCAA 86433 Query 13772 CCATGAATCACCGAGACGAGG-TGCAGACTTTGTGACCATGAAGAT 13816 ||| || || || | || || ||| |||||| |||| ||||| Sbjct 86434 CCACGAGTCCCCCCGCCGTGGCCGCA-CCTTTGTCACCAGAAAGAT 86478 >seq1695 Length=206671 Score = 116 bits (128), Expect = 5e-21 Identities = 233/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 118562 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 118621 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || ||| | || ||||| || | ||||||||| Sbjct 118622 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAGACTTTGCCCTGCTGCAAGCCCAAGATC 118681 Query 176843 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT--GAGCTGTGTGACAGAGGCATCACGA 176899 | ||||| ||| ||||| ||| | | || ||| | || | | || ||||| Sbjct 118682 TGCTTGA--TCGCTTGAA-TCTCGACATTATCGAGGAGGGCTTTGCCCGCCGCTTCACGC 118738 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||||||||| |||| || ||||| || || | Sbjct 118739 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACGGCC 118798 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 118799 AGACCCGACACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 118858 Query 177020 CCAGAT-TGTGC--CGTACCCGCCTTGTTCGCATCATC 177054 ||| || | ||| || || ||||| ||||| || Sbjct 118859 ---GATCCGTTCCTCGTTCCAGCGTTGTTTGCATCCTC 118893 >seq1880 Length=81946 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || || |||||| | | || | ||||||||| || ||||| |||||||| || ||||| Sbjct 66021 TCAGGCTCCTTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCCGGCCTCTGT 65962 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 |||||||||||||| || || || ||||| || || || Sbjct 65961 TTCTCCAACGAGCTCATATCCCGCGACGAAGGTCTTCA 65924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713496682000