Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3232 242 7e-59 seq1880 96.9 6e-15 seq3051 95.1 2e-14 >seq3232 Length=25038 Score = 242 bits (268), Expect = 7e-59 Identities = 791/1216 (65%), Gaps = 41/1216 (3%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479 || ||||||||||||||||| |||||| ||||||||| |||| |||||||| ||| Sbjct 4145 GCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG---CTTGCGCGCCTCGGGTGAA 4089 Query 221480 GTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||| ||||| || | | |||| | ||||||| || || || |||||||| ||||| Sbjct 4088 TCGAACGGCATCGCCAACGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGAT 4030 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 ||| | ||| | |||||| ||| || |||||||| ||||||||||||| Sbjct 4029 GGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 3970 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | ||| | ||| | || || ||| || || |||||| || |||| || || Sbjct 3969 GATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTC------TTAAA 3916 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 | || ||||| || || | | || | || ||| | || ||||| Sbjct 3915 GTCGTACACGCCG--TTCTTGATGAAGCTCGGC-AACGCG--------ATCG-AGGCCAA 3868 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || ||||| ||| || | |||| |||||||| || || | ||| Sbjct 3867 GTTGCAGACGGCGCACTCATCGGGCGCCGAGTACTCGATGATCTCGGTGCACAAGTTCGA 3808 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 ||||||| || || |||| || || || || || || || |||||||||||||| Sbjct 3807 CGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCGGCGTCCTTGTAGAG 3748 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGC 221898 ||| || || ||| || || | ||| || | |||||| || ||| || | | || Sbjct 3747 CATGAACGGGTTGCCGGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGC 3688 Query 221899 GCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC--- 221955 | | |||| ||||| | ||||| |||||| || | | || || | | Sbjct 3687 GGGGATCGTCTTCTTGGCGCGGCCCTC---CTTTTCGTA---TTTCTCGAACAAGGCGCG 3634 Query 221956 AAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCA 222015 |||| ||| || || | |||| ||||| || ||||| || | || ||| Sbjct 3633 GAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCA 3574 Query 222016 GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAG 222075 | || | | | ||| | || ||| || || || || ||||| ||||| ||||| Sbjct 3573 CTCGCTGGCGGCCTCGACACGCTCCATAAACAGATCGGGAATCCAGAGCGCAAAGAAGAG 3514 Query 222076 ATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAAT 222135 ||| | | || ||||||| ||||| ||| || | || |||| ||||| || | Sbjct 3513 ATCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGAC 3454 Query 222136 GTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTG 222195 |||||||||||| ||||| || |||| || | || ||||| |||||||||||||| || Sbjct 3453 GTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTG 3394 Query 222196 ATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCG 222255 || || | | | |||| ||| || || | || || | ||||| || Sbjct 3393 GTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTA 3334 Query 222256 ACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGA 222314 ||||| ||||| ||||| | ||| || | | ||| ||| | || |||| Sbjct 3333 GCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCGA 3275 Query 222315 TACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCA 222374 ||||||||||| || ||||| | ||||| ||||||| ||||| |||||| || | Sbjct 3274 TACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCGA 3215 Query 222375 TAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGG 222434 | ||||| ||||| | | | | ||| ||||| ||||| | ||| | | | | | || Sbjct 3214 TCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCGG 3155 Query 222435 CGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCT 222494 |||| || ||||| || |||||| |||||||||| | ||||| || | ||||| || Sbjct 3154 CGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACGACT 3095 Query 222495 CTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACT 222554 | ||| | |||||| || ||||| || | |||| | |||| ||||| | Sbjct 3094 GCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACGCGCATGAGCATGTGTT 3035 Query 222555 GGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTT 222612 | || | || | |||| | | | || |||| ||| || || || ||||| Sbjct 3034 GCGGGCGTTCGGC--GACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGCGTCTT 2977 Query 222613 GAACCCAAAGTAGTTG 222628 ||| |||||||||||| Sbjct 2976 GAAGCCAAAGTAGTTG 2961 >seq1880 Length=81946 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||| |||||||| | || ||| || ||| ||||||||||||| ||||| Sbjct 66706 ATCTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGATCTC 66647 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| ||| | ||| |||| || |||| | ||| ||||| | | ||| || Sbjct 66646 GGCAACGACCTCCACGACTGGCACCACAAGCTCAA--CAACGACGAACGCTACTTTATCG 66589 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || || || ||||| | ||||| |||||| || ||||| Sbjct 66588 CCCACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAATTTGGTCGAGA 66529 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | ||| | || || ||||||| || ||||| | ||| || || || || ||||| Sbjct 66528 GGTTCTCGAGCGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGGTTTCAGAT 66474 >seq3051 Length=61137 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/199 (71%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC-----GCTCTAT 25567 ||||||||||||||||| || || ||||||||||| ||| |||| || |||| | Sbjct 31879 TGGACCGCCGAAGAGATGGACTTGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAG 31938 Query 25568 CCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTA 25627 || ||||||| | || || | |||| | || || || || ||||| || || | Sbjct 31939 CCC--GACGAGCGCTACTTCATCTCGCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCA 31996 Query 25628 TAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGT 25687 | || |||||||| || |||| ||||| | | || || |||| || ||||| | Sbjct 31997 TTGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGAGGTCCAGTCCGCCGAGGCTCGAT 32056 Query 25688 GTTTCTACGGTTTCCAGAT 25706 | |||||||||||||| || Sbjct 32057 GCTTCTACGGTTTCCAAAT 32075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928801550664000