Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3152 98.7 3e-15 seq2252 86.0 2e-11 >seq3152 Length=18072 Score = 98.7 bits (108), Expect = 3e-15 Identities = 131/178 (74%), Gaps = 12/178 (7%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || ||||| ||||||||||||||||| |||||||||||||||||||| || | Sbjct 9934 CCGTGAGAGATCATGCAATCACGCTCCATTTCTCCGAAACGAAGACCACCATCTCGCGAT 9993 Query 251548 CTACCCTCGGCAGGCTGACGAGT-GAGAT-TAACCATAGGACC----GATGGAGCGGCTA 251601 | |||||| | || || || || |||| | | | |||||| | | ||| | | Sbjct 9994 CGACCCTCCACGGGTTGTCGGGTCAAGATCTGA--AGAGGACCGCGAGCTCGAGAGTGAA 10051 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 | ||| || || ||||| ||||||||||| |||||| ||| ||||| | | ||| Sbjct 10052 TTTTG----TCGTTGACCATGTGCTTGAGACGTTGGTAGTATGTTGGACCAAGGTAGA 10105 >seq2252 Length=413416 Score = 86.0 bits (94), Expect = 2e-11 Identities = 186/275 (68%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 302544 TACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAAT 302603 |||||| ||| || ||| ||| | ||||| | ||||| | |||||| ||||| Sbjct 377442 TACGGTGCCATCGTATGCAACCATGACATCTTCGAGCGCCTTGACGAGACGACGTTGAAT 377501 Query 302604 ATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGC 302663 || || || || || || || || ||||| || | || | || || |||| || Sbjct 377502 GTACCCCGTCTCAGCCGTCTTGACGGCCGTATCGATCAATCCTTCTCGTCCGGCCATGGC 377561 Query 302664 ATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCA 302721 |||||||| | ||||| |||| || | || | ||| | | || | || |||||||| Sbjct 377562 GTGGAAGAAGAACTCTTGCGGT-GTCAAACCTCGCAAGTACG-AGTTTTCGACGAAACCC 377619 Query 302722 CGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCG 302781 | ||| |||||||| | ||| |||||||||||| |||| ||| | | || | || Sbjct 377620 CTCGCTTCGGGCGAGTAATCGTCCTTGGTAAAGTGGGGCAAGGTACGATGCTTGAACCCA 377679 Query 302782 TATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 | || | ||| || || || ||| |||| || || Sbjct 377680 AACGGCACACGTTTGCCCTCGACGATCTGTTGCCC 377714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471747355205325