Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3232 210 3e-48 seq2592 140 5e-27 seq1795 127 3e-23 seq3051 116 6e-20 seq2122 86.0 1e-10 >seq3232 Length=25038 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 3395 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 3336 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||| | ||| | ||||| | ||||| | || ||| Sbjct 3335 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 3276 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 3275 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 3216 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| |||||||| | ||| || |||||||| |||||| | | ||| ||| Sbjct 3215 ATCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 3156 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 3155 GCGTTGAAGAGCGTCGGCG 3137 Score = 145 bits (160), Expect = 1e-28 Identities = 300/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||| ||| | |||| | | ||||| |||||| Sbjct 3845 GGCGCCGAGTACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTGCCAAGGTTC 3786 Query 2071624 TGCTGGTT-GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTC 2071682 | ||||| | | | | ||| |||||||||||| |||||| | || || || || Sbjct 3785 TTTTGGTTCGATTTTTTGTTTG-CGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 3727 Query 2071683 GATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG 2071742 || ||| || | || || |||||| | ||||||| | || || | ||||| Sbjct 3726 GACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCG 3667 Query 2071743 GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAG 2071802 ||||| | | |||| || | |||| | | ||||| || Sbjct 3666 GCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAG 3607 Query 2071803 GCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCAT 2071862 |||||| || || | ||||| ||||| | ||| |||| | | | | | || || ||| Sbjct 3606 GCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCTGGCGGCCTCGACACGCTCCAT 3547 Query 2071863 AAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCC 2071922 |||||| ||| |||| || | | |||||||| || || ||| |||||||||||| Sbjct 3546 AAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACCTCCTCCTTGCC 3487 Query 2071923 GTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCA 2071982 ||||||||| ||||| || | |||| || ||| |||||||| ||||| |||||| Sbjct 3486 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 3427 Query 2071983 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 3426 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 3397 Score = 105 bits (116), Expect = 1e-16 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | || ||||||| ||||||||||| Sbjct 5006 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 4947 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| ||||| |||||||||||||| | | ||| ||| Sbjct 4946 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GCTGTGCCATCGTCG 4889 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||||| ||| | || |||||| Sbjct 4888 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCC 4830 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || ||||| | | | ||| || | |||||| ||||||||| | | ||||||||| Sbjct 4829 GACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 4771 Query 2069487 AT 2069488 || Sbjct 4770 AT 4769 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 4146 CGCGGCGTGGTAGATGGTCTCGAAGATC-TGCTTGTTGAGCTTGCGCGCCTCGGGTGAAT 4088 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 4087 CGAACGGCATCGCCAAC--GCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 4030 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | | |||||| || || |||| ||||| |||||| Sbjct 4029 GGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 3970 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 3969 GATGCGGTTCAAGTTG 3954 >seq2592 Length=1546 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1439 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1380 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 1379 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 1323 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| ||||| Sbjct 1322 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 1263 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1262 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 1216 >seq1795 Length=37806 Score = 127 bits (140), Expect = 3e-23 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 36237 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 36178 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| |||||||| || | ||| || ||||| |||| || ||| || | Sbjct 36177 AGGTTTGGATCTCTCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGTTTGG 36121 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| |||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 36120 ATGCCTCGGTGGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 36061 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||| ||| Sbjct 36060 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACTTTG 36014 >seq3051 Length=61137 Score = 116 bits (128), Expect = 6e-20 Identities = 147/199 (74%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 796150 GCCTCGG-GTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 ||||||| | ||| ||||||| ||| || || ||| |||||| || ||||| Sbjct 32051 GCCTCGGCGGACT-GGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACAATGCC 31993 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||||||||||||||||||| ||| |||| ||||||||| |||| Sbjct 31992 GTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAG 31933 Query 796269 C---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||||| | | |||| | | ||| | ||| ||||||||||||||||| Sbjct 31932 CTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAAAAGGA 31873 Query 796326 GGCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 31872 TGCCTCGGCCTTCTTGTAC 31854 >seq2122 Length=122159 Score = 86.0 bits (94), Expect = 1e-10 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || || || || ||||||||| | |||||||||| || ||||||| | || ||| Sbjct 96710 CTCCCACCGGGTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGA 96769 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| || ||||| ||| ||||||| | | ||||||| || || || || | Sbjct 96770 GCCCAGCAAGCGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTT 96829 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || |||||| | | ||||||| | | ||||| || |||||||||||| | Sbjct 96830 GCGTGCAACCAGAGCAACAAAATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGG 96889 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | || | || ||||| ||| || | |||| ||| |||||| ||| ||| Sbjct 96890 TACTCGAGGCTGACCGATGCCGAGTTGTTGAGGCGTTTGCTGGAGATTTGCGAAATTGAA 96949 Query 2019435 AAGGT 2019439 ||||| Sbjct 96950 AAGGT 96954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915850154760275